BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042324
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    61   1e-07
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    60   2e-07
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          60   2e-07
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    60   2e-07
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   2e-06

>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +3

Query: 39  PKHSFTTWQLFSGTLPTQNRLKAKRVIAQSKCCLCGCHEESSAHLFFDCPFSKLVWQNF 215
           PKH+F  W +    L T++RL++  +   + C LC  H+ES AHLFF+CPF   VW+ F
Sbjct: 162 PKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWRFF 220


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +3

Query: 39  PKHSFTTWQLFSGTLPTQNRLKAKRVIAQSKCCLCGCHEESSAHLFFDCPFSKLVWQNFK 218
           PKH+F  W +    L T++RL+   +   ++C LC  H++S AHLFF+C FS +VW+ F 
Sbjct: 140 PKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFT 199

Query: 219 IAMGL 233
            +  L
Sbjct: 200 ASTNL 204


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +3

Query: 39  PKHSFTTWQLFSGTLPTQNRLKAKRVIAQSKCCLCGCHEESSAHLFFDCPFSKLVWQNFK 218
           PKH+F  W +    L T++RL+   +   ++C LC  H++S AHLFF+C FS +VW+ F 
Sbjct: 140 PKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFT 199

Query: 219 IAMGL 233
            +  L
Sbjct: 200 ASTNL 204


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +3

Query: 39  PKHSFTTWQLFSGTLPTQNRLKAKRVIAQSKCCLCGCHEESSAHLFFDCPFSKLVWQNFK 218
           PKH+F  W +    L T++RL+   +   ++C LC  H++S AHLFF+C FS +VW+ F 
Sbjct: 140 PKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFT 199

Query: 219 IAMGL 233
            +  L
Sbjct: 200 ASTNL 204


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%)
 Frame = +3

Query: 27   SKVRPKHSFTTWQLFSGTLPTQNRLKAKRVIAQSKCCLCGCHEESSAHLFFDCPFSKLVW 206
            S + PK  F TW+L +  L T + L+ + ++ Q  C LC   +E+ +HLF DC  S+ VW
Sbjct: 1060 SDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMCSLCKQDKENESHLFRDCNISRHVW 1119

Query: 207  QNFKIAMGLPEMVRASHIEW 266
             +  + + +  M   S  +W
Sbjct: 1120 ASSLLGIRICPMTVISIEDW 1139