BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042284
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...   107   8e-22
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           107   8e-22
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   107   8e-22
gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thali...   107   1e-21
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   105   3e-21

>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score =  107 bits (268), Expect = 8e-22
 Identities = 48/100 (48%), Positives = 70/100 (70%)
 Frame = -3

Query: 301 FPRGALPVKYLGLPLITTRLKARDCTPLIEKVRQRIQAWKGRALSYAGRLQLLKVVLNGM 122
           F  GALPV+YLGLPL+T ++   D  PL+EK+R RI  W  R LS+AGRLQL+  V++ +
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 121 SIYWTSSFVLPQSTIDAINQLCRNFLWNGPECSTSHALIS 2
           + +W S+F LP + I  I+ +C +FLW+GPE +T  A ++
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVA 117


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  107 bits (268), Expect = 8e-22
 Identities = 48/100 (48%), Positives = 70/100 (70%)
 Frame = -3

Query: 301 FPRGALPVKYLGLPLITTRLKARDCTPLIEKVRQRIQAWKGRALSYAGRLQLLKVVLNGM 122
           F  GALPV+YLGLPL+T ++   D  PL+EK+R RI  W  R LS+AGRLQL+  V++ +
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 121 SIYWTSSFVLPQSTIDAINQLCRNFLWNGPECSTSHALIS 2
           + +W S+F LP + I  I+ +C +FLW+GPE +T  A ++
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVA 117


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  107 bits (268), Expect = 8e-22
 Identities = 49/100 (49%), Positives = 70/100 (70%)
 Frame = -3

Query: 301  FPRGALPVKYLGLPLITTRLKARDCTPLIEKVRQRIQAWKGRALSYAGRLQLLKVVLNGM 122
            F  G+LPV+YLGLPL+T R+   DC PL+EK+R RI +WK R LSYAGRLQLL  V++ +
Sbjct: 1017 FDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSL 1076

Query: 121  SIYWTSSFVLPQSTIDAINQLCRNFLWNGPECSTSHALIS 2
            + +W S+F LP++ I  I Q+   FLW+G + +   A ++
Sbjct: 1077 TKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVA 1116


>gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thaliana]
          Length = 355

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/95 (52%), Positives = 69/95 (72%)
 Frame = -3

Query: 286 LPVKYLGLPLITTRLKARDCTPLIEKVRQRIQAWKGRALSYAGRLQLLKVVLNGMSIYWT 107
           LPV+YLGLPL+T  + A D  PLIEK+R+RI +W GR LSY GRLQL+K VL  ++ +W+
Sbjct: 12  LPVRYLGLPLMTKAMTAHDYLPLIEKIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWS 71

Query: 106 SSFVLPQSTIDAINQLCRNFLWNGPECSTSHALIS 2
           S+F LP + +  I +LC  FLW+GP+  T +A I+
Sbjct: 72  SAFRLPGNCMKEIERLCSAFLWSGPDLKTHNAKIA 106


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/111 (45%), Positives = 72/111 (64%)
 Frame = -3

Query: 334  TVAVQMGEILQFPRGALPVKYLGLPLITTRLKARDCTPLIEKVRQRIQAWKGRALSYAGR 155
            T   ++ +   F  G LPV+YLGLPLIT RL   DC PL+E+VR+RI +W  R LSYAGR
Sbjct: 751  TARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGR 810

Query: 154  LQLLKVVLNGMSIYWTSSFVLPQSTIDAINQLCRNFLWNGPECSTSHALIS 2
            L L+  VL  +  +W ++F LP+  I  + ++C  FLW+G E +++ A IS
Sbjct: 811  LNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKIS 861