BLASTX nr result

ID: Coptis23_contig00042269 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042269
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317225.1| predicted protein [Populus trichocarpa] gi|2...   105   5e-21
emb|CAN77674.1| hypothetical protein VITISV_013720 [Vitis vinifera]   104   9e-21
ref|XP_002278331.1| PREDICTED: 1-aminocyclopropane-1-carboxylate...   103   1e-20
ref|XP_002299737.1| predicted protein [Populus trichocarpa] gi|2...    70   4e-19
ref|XP_002515973.1| conserved hypothetical protein [Ricinus comm...    97   1e-18

>ref|XP_002317225.1| predicted protein [Populus trichocarpa] gi|222860290|gb|EEE97837.1|
           predicted protein [Populus trichocarpa]
          Length = 373

 Score =  105 bits (261), Expect = 5e-21
 Identities = 58/132 (43%), Positives = 80/132 (60%)
 Frame = -1

Query: 493 LESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVSRSSERVYXXXXXXXXX 314
           L+S+A IGCFQLVN G+ S+ I+ VS+ AAGIF LP +KK AV +S E+ Y         
Sbjct: 86  LDSIARIGCFQLVNFGIPSEFIKLVSVMAAGIFQLPSEKKAAVMKSPEKPYGFEEVHGDQ 145

Query: 313 XXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNFSKEMENLSTEIEKIASKVVFKLIEHAP 134
                   EFVW +DE LK  ME I   G+SNFS++ME LS+++  +A+K++  L E+ P
Sbjct: 146 EAENELSEEFVWSKDESLKLDMERIWPTGYSNFSEKMETLSSDLGNLAAKILQVLQENCP 205

Query: 133 MASAKLTNMTDR 98
             S    +M  R
Sbjct: 206 RKSKYANDMMQR 217


>emb|CAN77674.1| hypothetical protein VITISV_013720 [Vitis vinifera]
          Length = 373

 Score =  104 bits (259), Expect = 9e-21
 Identities = 58/119 (48%), Positives = 78/119 (65%)
 Frame = -1

Query: 493 LESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVSRSSERVYXXXXXXXXX 314
           LES +G GCFQLVNHG+  +LIRSV+ AAAG+F +  +KK  VSRS E++Y         
Sbjct: 86  LESFSGTGCFQLVNHGIPCNLIRSVTTAAAGVFRISPEKKATVSRSQEKIY-GFEEIHEE 144

Query: 313 XXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNFSKEMENLSTEIEKIASKVVFKLIEHA 137
                   EFVW RDE LK  MEGI    +SNFS++ME L ++IEK+A+K++  L E++
Sbjct: 145 DESEMSSEEFVWGRDENLKLEMEGIWPLAYSNFSEKMEILLSDIEKVANKILLILKENS 203


>ref|XP_002278331.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Vitis
           vinifera]
          Length = 373

 Score =  103 bits (258), Expect = 1e-20
 Identities = 58/128 (45%), Positives = 82/128 (64%)
 Frame = -1

Query: 493 LESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVSRSSERVYXXXXXXXXX 314
           LES +G GCFQLVNHG+  +LIRSV+ AAAG+F +  +KK  VSRS E++Y         
Sbjct: 86  LESFSGTGCFQLVNHGIPCNLIRSVTTAAAGVFRISPEKKATVSRSQEKIY-GFEEIHEE 144

Query: 313 XXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNFSKEMENLSTEIEKIASKVVFKLIEHAP 134
                   EFVW RDE LK  MEGI    +SNFS++ME L ++IEK+A+K++  +++   
Sbjct: 145 DESEMSSEEFVWGRDENLKLEMEGIWPLAYSNFSEKMEILLSDIEKVANKILL-ILKETS 203

Query: 133 MASAKLTN 110
           + ++K  N
Sbjct: 204 LKNSKFGN 211


>ref|XP_002299737.1| predicted protein [Populus trichocarpa] gi|222846995|gb|EEE84542.1|
           predicted protein [Populus trichocarpa]
          Length = 294

 Score = 70.5 bits (171), Expect(2) = 4e-19
 Identities = 45/95 (47%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = -1

Query: 493 LESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVSRSSERVYXXXXXXXXX 314
           L+S+A IGCFQLVN G+ +           GIF LP +KK AVSRS ER Y         
Sbjct: 79  LDSIARIGCFQLVNFGIPT-----------GIFQLPPEKKEAVSRSLERPYGFEEVHGDH 127

Query: 313 XXXXXXXXE-FVWCRDEGLKSVMEGIRLQGFSNFS 212
                   E FVWC+DE LK  MEGI   G+SNFS
Sbjct: 128 QEAESEVSEEFVWCKDESLKLDMEGIWPTGYSNFS 162



 Score = 48.9 bits (115), Expect(2) = 4e-19
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 102 TDFHVYSKKSWISFTPSRHAIVMTIGDQIQARSG 1
           ++FHVYSKK W+SF P + A+++T+GD+ Q  SG
Sbjct: 191 SEFHVYSKKGWVSFCPDKDALIVTVGDRTQVWSG 224


>ref|XP_002515973.1| conserved hypothetical protein [Ricinus communis]
           gi|223544878|gb|EEF46393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 53/119 (44%), Positives = 76/119 (63%)
 Frame = -1

Query: 493 LESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVSRSSERVYXXXXXXXXX 314
           L+S++ IGCFQLVN+G+ SD  R V   AAGIF +P +K+ AV+RS E++Y         
Sbjct: 89  LDSLSRIGCFQLVNYGVPSDFARMVLAMAAGIFSVPPEKRAAVTRSPEKLY--GFEEVHG 146

Query: 313 XXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNFSKEMENLSTEIEKIASKVVFKLIEHA 137
                   EF+WCRD+ L+  MEGI   G+SNFS +ME L +E+E +A K++  L E++
Sbjct: 147 EEESEVSEEFLWCRDKNLRLDMEGIWPSGYSNFSNKMEALVSEMENVAEKLLQVLQENS 205


Top