BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042244
         (468 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ86307.1| unknown [Medicago truncatula]                          128   4e-28
ref|XP_003524829.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydro...   120   9e-26
ref|XP_003599260.1| tRNA-dihydrouridine synthase A [Medicago tru...   120   9e-26
ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-li...   120   2e-25
ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-li...   119   3e-25

>gb|ACJ86307.1| unknown [Medicago truncatula]
          Length = 432

 Score =  128 bits (322), Expect = 4e-28
 Identities = 69/116 (59%), Positives = 80/116 (68%), Gaps = 14/116 (12%)
 Frame = +2

Query: 161 SVSTRFASLLT---TSNHQSMSFNMSFQVRT---FCSQT-----KKQYPKHAM---QYFP 298
           S+S  F+ L +   T N  S    +SF  R+    CS       ++ Y KH +   QY P
Sbjct: 7   SISVSFSPLSSNFITRNSCSRRLPVSFSRRSRRNLCSSRVFSVKQQSYHKHGVLGKQYLP 66

Query: 299 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPPDQ 466
           PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETIVHQKDNLDRFLA+ P+Q
Sbjct: 67  PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPEQ 122


>ref|XP_003524829.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase A-like
           [Glycine max]
          Length = 437

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/81 (70%), Positives = 63/81 (77%), Gaps = 5/81 (6%)
 Frame = +2

Query: 239 RTFCSQTKKQYPKH-----AMQYFPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVV 403
           R F +  +KQ  +      A  Y PPWFSVAPMMDWTD+HYRTL RLISKHAWLYTEM+ 
Sbjct: 40  RLFSTHAQKQQLQEKPGVVARYYLPPWFSVAPMMDWTDHHYRTLVRLISKHAWLYTEMLA 99

Query: 404 AETIVHQKDNLDRFLAFPPDQ 466
           AETIVHQKDNLDRFLA+ PDQ
Sbjct: 100 AETIVHQKDNLDRFLAYSPDQ 120


>ref|XP_003599260.1| tRNA-dihydrouridine synthase A [Medicago truncatula]
           gi|355488308|gb|AES69511.1| tRNA-dihydrouridine synthase
           A [Medicago truncatula]
          Length = 294

 Score =  120 bits (302), Expect = 9e-26
 Identities = 53/59 (89%), Positives = 56/59 (94%)
 Frame = +2

Query: 290 YFPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPPDQ 466
           Y PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETIV+QK NLDRFLA+PPDQ
Sbjct: 6   YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVYQKGNLDRFLAYPPDQ 64


>ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]
          Length = 430

 Score =  120 bits (300), Expect = 2e-25
 Identities = 62/113 (54%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
 Frame = +2

Query: 161 SVSTRFASLLTTSNHQSMSFNMSFQVRTFCSQT--KKQYPKH---------AMQYFPPWF 307
           S++  FA + +     +  F +    R  CS         KH         A  + PPWF
Sbjct: 8   SLAVSFAPISSNVVKSNKRFTVGISHRNRCSYRLFSTHAQKHQLHEKPGVVARYHLPPWF 67

Query: 308 SVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPPDQ 466
           SVAPMMDWTD+HYRTLARLISKHAWLYTEM+ AETIVHQKDNLDRFLA+ PDQ
Sbjct: 68  SVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQ 120


>ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis
           vinifera]
          Length = 433

 Score =  119 bits (297), Expect = 3e-25
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 9/98 (9%)
 Frame = +2

Query: 200 NHQSMSFNMSFQVRTFCSQTKKQYPKHAM---------QYFPPWFSVAPMMDWTDNHYRT 352
           NH+ +S N+ +        +     KH +         QY PPWFSVAPMMDWT+NHYRT
Sbjct: 23  NHRRLSLNILYGNSAKSKNSTAYIRKHQLHTKVVMVAGQYLPPWFSVAPMMDWTNNHYRT 82

Query: 353 LARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPPDQ 466
           LARLISKHAWLYTEM+ AETIV+Q+ NLDRFL F PDQ
Sbjct: 83  LARLISKHAWLYTEMIAAETIVYQEKNLDRFLEFSPDQ 120