BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042242
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28186.3| unnamed protein product [Vitis vinifera]              185   4e-45
ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
ref|XP_002524479.1| pentatricopeptide repeat-containing protein,...   170   1e-40

>emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  185 bits (469), Expect = 4e-45
 Identities = 87/126 (69%), Positives = 105/126 (83%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+KLDHVSF+  ++ACGH +  ELGR IH   +K GY+THV VCNVLIS YSKCE +EDA
Sbjct: 250 GMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDA 309

Query: 181 NRVFESMIERNVVSWTTAISMNEENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
             VFES+I+RNVVSWTT IS++EE+A SLF  MR DGVYPN+VTFVGLIHA+++KNL+ E
Sbjct: 310 KLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEE 369

Query: 361 GQMIHG 378
           GQMIHG
Sbjct: 370 GQMIHG 375



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  + V+F  ++ A   +  +E G+ IH   +KT + + ++V N LI+MY+K E + D+
Sbjct: 346 GVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDS 405

Query: 181 NRVFESMIERNVVSWTTAISMNEEN-----ALSLFIVMRLDGVYPNEVTFVGLIHALSIK 345
            +VFE +  R ++SW + IS   +N     AL  F+   ++   PNE TF  ++ +++  
Sbjct: 406 MKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASA 464

Query: 346 NL--LREGQMIH 375
               +R GQ  H
Sbjct: 465 EAISMRHGQRCH 476



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
 Frame = +1

Query: 22  SFSSVVAACGHERSLEL--GRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRVFE 195
           +F SV+++     ++ +  G+  H  ILK G  T+  V + L+ MY+K   + ++  VF 
Sbjct: 453 TFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFS 512

Query: 196 SMIERNVVSWTTAISMNE-----ENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
               +N V+WT  IS +      E  ++LF  M  +GV P+ +TF+ +I A   K ++  
Sbjct: 513 ETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDT 572

Query: 361 GQMI 372
           G  +
Sbjct: 573 GYQL 576



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = +1

Query: 10  LDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRV 189
           +D V+ + V+ AC  +   +LG  IH   + +G+ +HV+V N L++MY K  + + A  V
Sbjct: 78  IDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVV 135

Query: 190 FESMIERNVVSWTTAIS--MNEENALSLFIVMRLDGVYPNEVT 312
           FE++   ++VSW T +S     ++AL+  + M   GV  + VT
Sbjct: 136 FENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVT 178


>ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  185 bits (469), Expect = 4e-45
 Identities = 87/126 (69%), Positives = 105/126 (83%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+KLDHVSF+  ++ACGH +  ELGR IH   +K GY+THV VCNVLIS YSKCE +EDA
Sbjct: 273 GMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDA 332

Query: 181 NRVFESMIERNVVSWTTAISMNEENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
             VFES+I+RNVVSWTT IS++EE+A SLF  MR DGVYPN+VTFVGLIHA+++KNL+ E
Sbjct: 333 KLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEE 392

Query: 361 GQMIHG 378
           GQMIHG
Sbjct: 393 GQMIHG 398



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  D V+ ++V+A C        G  +H  ILK G +  V V N LI+MYS+C  + +A
Sbjct: 171 GVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEA 230

Query: 181 NRVFESMIERNVVSWTTAIS--MNEEN----ALSLFIVMRLDGVYPNEVTFVGLIHALSI 342
            RVF+ M  +++VSW   +S    E N    A+ +F+ M  +G+  + V+F G I A   
Sbjct: 231 RRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGH 290

Query: 343 KNLLREGQMIH 375
                 G+ IH
Sbjct: 291 GKEFELGRQIH 301



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  + V+F  ++ A   +  +E G+ IH   +KT + + ++V N LI+MY+K E + D+
Sbjct: 369 GVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDS 428

Query: 181 NRVFESMIERNVVSWTTAISMNEEN-----ALSLFIVMRLDGVYPNEVTFVGLIHALSIK 345
            +VFE +  R ++SW + IS   +N     AL  F+   ++   PNE TF  ++ +++  
Sbjct: 429 MKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASA 487

Query: 346 NL--LREGQMIH 375
               +R GQ  H
Sbjct: 488 EAISMRHGQRCH 499



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
 Frame = +1

Query: 22  SFSSVVAACGHERSLEL--GRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRVFE 195
           +F SV+++     ++ +  G+  H  ILK G  T+  V + L+ MY+K   + ++  VF 
Sbjct: 476 TFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFS 535

Query: 196 SMIERNVVSWTTAISMNE-----ENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
               +N V+WT  IS +      E  ++LF  M  +GV P+ +TF+ +I A   K ++  
Sbjct: 536 ETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDT 595

Query: 361 GQMI 372
           G  +
Sbjct: 596 GYQL 599



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = +1

Query: 10  LDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRV 189
           +D V+ + V+ AC  +   +LG  IH   + +G+ +HV+V N L++MY K  + + A  V
Sbjct: 78  IDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVV 135

Query: 190 FESMIERNVVSWTTAIS--MNEENALSLFIVMRLDGVYPNEVT 312
           FE++   ++VSW T +S     ++AL+  + M   GV  + VT
Sbjct: 136 FENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVT 178


>ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  172 bits (436), Expect = 3e-41
 Identities = 77/126 (61%), Positives = 103/126 (81%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+K D+V  +  ++ CGHER+LELG+ IHC  +KTG+ETH SV NVLIS YSKCE++EDA
Sbjct: 268 GVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDA 327

Query: 181 NRVFESMIERNVVSWTTAISMNEENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
             VFE + +RNV+SWTT IS+ EE A+SLF  MRLDGVYPN+VTF+GL+HA++I+N++ +
Sbjct: 328 KAVFELINDRNVISWTTMISLYEEGAVSLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQ 387

Query: 361 GQMIHG 378
           G M+HG
Sbjct: 388 GLMVHG 393



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+K D V++++ ++ C        G  +H   LK G++  V V N L++MYS+ E + DA
Sbjct: 166 GVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDA 225

Query: 181 NRVFESMIERNVVSWTTAIS------MNEENALSLFIVMRLDGVYPNEVTFVGLIHALSI 342
            +VF+ M  R+ VSW+  I+       N   A+ +F+ M  +GV  + V   G +     
Sbjct: 226 RKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGH 285

Query: 343 KNLLREGQMIH 375
           +  L  G+ IH
Sbjct: 286 ERNLELGKQIH 296



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
 Frame = +1

Query: 40  AACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRVFESMIERNVV 219
           A CG  +   LGR IH  ++ +G+ +H++V N L++MY K   +E A  VF+++ + ++V
Sbjct: 84  ACCGFPK---LGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIV 140

Query: 220 SWTTAISMNE--ENALSLFIVMRLDGVYPNEVTF 315
           SW T +S  E  ENALS  + M L+GV  + VT+
Sbjct: 141 SWNTILSGFEKSENALSFALRMNLNGVKFDSVTY 174



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  + V+F  ++ A      +E G  +H   +K  + + ++V N LI+MY+K E ++DA
Sbjct: 364 GVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDA 423

Query: 181 NRVFESMIERNVVSWTTAISMNEENALS-------LFIVMRLDGVYPNEVTFVGLIHALS 339
           +RVF  +  R ++SW   IS   +NAL        L+ +M      PNE TF  +++A+S
Sbjct: 424 SRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIMEYK---PNEYTFGSVLNAIS 480

Query: 340 IKN--LLREGQMIH 375
                 L+ GQ  H
Sbjct: 481 AGEDISLKHGQRCH 494


>ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  170 bits (430), Expect = 1e-40
 Identities = 81/126 (64%), Positives = 102/126 (80%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+ +DHVS +  V+ACGH ++LELGR IH    K GY THVSVCNVL+S YSKCEV +DA
Sbjct: 273 GMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDA 332

Query: 181 NRVFESMIERNVVSWTTAISMNEENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
             VFES+  RNVVSWTT IS++EE+A+SLF  MR++GVYPN+VTF+GLIHA++I+NL+ E
Sbjct: 333 KAVFESISNRNVVSWTTMISIDEEDAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTE 392

Query: 361 GQMIHG 378
           G  IHG
Sbjct: 393 GLTIHG 398



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  D V+++S +A C  +     G  +H  ++K G    V + N L++MYS+  ++++A
Sbjct: 170 GIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEA 229

Query: 181 NRVFESMIERNVVSWTTAISMNEE-------NALSLFIVMRLDGVYPNEVTFVGLIHALS 339
            RVF+ M ER++VSW   IS   +        A+ LF+ M   G+  + V+  G + A  
Sbjct: 230 RRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACG 289

Query: 340 IKNLLREGQMIHG 378
               L  G+ IHG
Sbjct: 290 HMKNLELGRQIHG 302



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
 Frame = +1

Query: 4   LKLDHVSFSSVV--AACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVED 177
           +K +  +F SV+   A   + SL  G+  H  +LK G  T   V   L+ MY K   + +
Sbjct: 470 IKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIE 529

Query: 178 ANRVFESMIERNVVSWTTAISM-----NEENALSLFIVMRLDGVYPNEVTFVGLIHALSI 342
           + RVF   +ER   +WT  IS      + E+ +SL+  M  +G+ P+ +TF+ ++ A   
Sbjct: 530 SQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCR 589

Query: 343 KNLLREGQMI 372
           K ++  G  +
Sbjct: 590 KGMVDAGHRV 599


>ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536267|gb|EEF37919.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 576

 Score =  170 bits (430), Expect = 1e-40
 Identities = 80/126 (63%), Positives = 103/126 (81%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+KLDHVSF+S ++ACGHER+LE+GR +H   +K GY  HVSV NVLIS YSKCE++EDA
Sbjct: 273 GIKLDHVSFTSAISACGHERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCEIIEDA 332

Query: 181 NRVFESMIERNVVSWTTAISMNEENALSLFIVMRLDGVYPNEVTFVGLIHALSIKNLLRE 360
             VF++M+ERNVVSWTT IS++EENA+S F  MR D V PN+VTFVGLIHA++I +L+  
Sbjct: 333 KLVFQNMLERNVVSWTTMISIDEENAVSFFNEMRYDEVDPNDVTFVGLIHAITIGDLVES 392

Query: 361 GQMIHG 378
           G+ +HG
Sbjct: 393 GKTVHG 398



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
 Frame = +1

Query: 1   GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 180
           G+  D V++++V+A C        G  +H  ILK G +  V V N LI+MYS+   + +A
Sbjct: 171 GVVFDAVTYTTVLAFCSRIEEFLFGLQLHSCILKVGLDCEVFVGNALITMYSRWGCLLEA 230

Query: 181 NRVFESMIERNVVSWTTAISMNEE------NALSLFIVMRLDGVYPNEVTFVGLIHALSI 342
            RVFE M   ++VSW   IS   +       A+S+FI M   G+  + V+F   I A   
Sbjct: 231 GRVFEEMQTTDLVSWNAIISGYTQAGIYGLEAISIFIEMVRRGIKLDHVSFTSAISACGH 290

Query: 343 KNLLREGQMIHG 378
           +  L  G+ +HG
Sbjct: 291 ERNLEVGRQVHG 302



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
 Frame = +1

Query: 19  VSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANRVFES 198
           V+F  ++ A      +E G+ +H   +K+G+    SV N  I+MY+K    ED+ +VFE 
Sbjct: 375 VTFVGLIHAITIGDLVESGKTVHGFCIKSGFSLEPSVQNSFITMYAKFGSAEDSMKVFEE 434

Query: 199 MIERNVVSWTTAISMNEENALS----LFIVMRLDGVYPNEVTFVGLIHALSIKN--LLRE 360
           +  R +++W   IS   +N LS    +     L    PN+ TF  ++ A+       L+ 
Sbjct: 435 LNYREIITWNALISGYAQNGLSQEAIITFFSALAESKPNQYTFGSVLSAIGAAEDISLKH 494

Query: 361 GQMIH 375
           GQM H
Sbjct: 495 GQMCH 499