BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042208
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containi...   163   1e-38
emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]   163   1e-38
ref|XP_002509520.1| pentatricopeptide repeat-containing protein,...   152   4e-35
ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containi...   131   7e-29
ref|XP_003576051.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26

>ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 474

 Score =  163 bits (413), Expect = 1e-38
 Identities = 77/127 (60%), Positives = 102/127 (80%)
 Frame = -1

Query: 382 NTIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLK 203
           NT+IRA A+S NPS+A+ +Y  MR L+V PGKHTFPF+LKAC N+  +    Q+H HVLK
Sbjct: 95  NTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLK 154

Query: 202 FGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVL 23
           FGL+L+L+V NGL+R YSVS +V ++R+VFDE+ ER+L +WT+MISGY QN+CS+EAL L
Sbjct: 155 FGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALEL 214

Query: 22  FDLMVNE 2
           FD M+ E
Sbjct: 215 FDQMIVE 221



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/120 (28%), Positives = 62/120 (51%)
 Frame = -1

Query: 379 TIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLKF 200
           T+I   A +   ++A+ ++ +M    + P   T   VL AC     + LG +IH  + + 
Sbjct: 197 TMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEK 256

Query: 199 GLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVLF 20
           G+E+ + +   L+ +Y+ +  +  ++K+FD I ERN   W +MI G   +  + EAL  F
Sbjct: 257 GIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRF 316


>emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
          Length = 476

 Score =  163 bits (413), Expect = 1e-38
 Identities = 77/127 (60%), Positives = 102/127 (80%)
 Frame = -1

Query: 382 NTIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLK 203
           NT+IRA A+S NPS+A+ +Y  MR L+V PGKHTFPF+LKAC N+  +    Q+H HVLK
Sbjct: 97  NTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLK 156

Query: 202 FGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVL 23
           FGL+L+L+V NGL+R YSVS +V ++R+VFDE+ ER+L +WT+MISGY QN+CS+EAL L
Sbjct: 157 FGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALEL 216

Query: 22  FDLMVNE 2
           FD M+ E
Sbjct: 217 FDQMIVE 223



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/120 (28%), Positives = 62/120 (51%)
 Frame = -1

Query: 379 TIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLKF 200
           T+I   A +   ++A+ ++ +M    + P   T   VL AC     + LG +IH  + + 
Sbjct: 199 TMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEK 258

Query: 199 GLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVLF 20
           G+E+ + +   L+ +Y+ +  +  ++K+FD I ERN   W +MI G   +  + EAL  F
Sbjct: 259 GIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRF 318


>ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549419|gb|EEF50907.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 413

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/127 (58%), Positives = 97/127 (76%)
 Frame = -1

Query: 382 NTIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLK 203
           NTIIRALANS NP QA+F Y +M  L V P K+TFPF+LK C ++  +   +QIH HVLK
Sbjct: 118 NTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGC-SFCSIQSCKQIHTHVLK 176

Query: 202 FGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVL 23
           FG +LDL+V N L+R+YS+ S++ D+ K+F E  ER+L +WT+MISGY QNFC++EALVL
Sbjct: 177 FGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGYAQNFCANEALVL 236

Query: 22  FDLMVNE 2
           F+ MV E
Sbjct: 237 FERMVAE 243



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/120 (26%), Positives = 64/120 (53%)
 Frame = -1

Query: 379 TIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLKF 200
           T+I   A +   ++A+ ++++M      P   T   VL  C     + LG +IH  +++ 
Sbjct: 219 TMISGYAQNFCANEALVLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFMIER 278

Query: 199 GLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVLF 20
           G+E+ + +   L+ +Y+ +  +  +RK+FD + E+N+  W +M+ G   +  + EAL LF
Sbjct: 279 GVEIGVILGTALVHMYAKNGKILVARKLFDSMTEKNVATWNAMLCGLASHGHAEEALSLF 338


>ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 465

 Score =  131 bits (329), Expect = 7e-29
 Identities = 64/127 (50%), Positives = 87/127 (68%)
 Frame = -1

Query: 382 NTIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCHVLK 203
           NT+IRA  ++P+   A+ +Y  MR  NV PGKHTFPF+LKAC         +Q+H HV+K
Sbjct: 88  NTLIRAQTHAPH---ALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIK 144

Query: 202 FGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALVL 23
           FGL+ D +V + L+R YSVS +   +R+VFDE  E+   +WT+M+ GY QNFCS+EAL L
Sbjct: 145 FGLDFDSHVVDALVRCYSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQNFCSNEALRL 204

Query: 22  FDLMVNE 2
           F+ MV E
Sbjct: 205 FEDMVGE 211



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
 Frame = -1

Query: 379 TIIRALANSPNPSQAIFIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIH--CHVL 206
           T++   A +   ++A+ +++ M      PG  T   VL AC     + LG +IH    V 
Sbjct: 187 TMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVK 246

Query: 205 KFGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEALV 26
             GL   + +   L+ +Y+ +  +  +R++FDE+ ERN+V W +MI G        +AL 
Sbjct: 247 GVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLGAYGYVDDALG 306

Query: 25  LFDLMVNE 2
           LF+ M  E
Sbjct: 307 LFEKMKKE 314


>ref|XP_003576051.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 468

 Score =  121 bits (304), Expect = 5e-26
 Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
 Frame = -1

Query: 382 NTIIRALANSPNPSQAI---FIYKKMRELNVSPGKHTFPFVLKACVNYFDVLLGRQIHCH 212
           NT +RALA+SP+P+ A     ++++    + SPG+HTFPF+LKA      + + +QIH  
Sbjct: 82  NTTLRALASSPDPASAFPFFSLHRRSGSSSYSPGRHTFPFLLKASAR-LALPVSQQIHAL 140

Query: 211 VLKFGLELDLYVANGLIRIYSVSSNVGDSRKVFDEIGERNLVVWTSMISGYTQNFCSSEA 32
           V+K GL LD YVANGL+R YSV+  +G +RKVFD + ER+ VV+T+M+SGYT N C  +A
Sbjct: 141 VVKHGLHLDTYVANGLVRAYSVAGLIGVARKVFDGLPERSTVVYTTMVSGYTLNGCYEDA 200

Query: 31  LVLFDLMVNE 2
           +  F  M+NE
Sbjct: 201 MGAFGEMINE 210