BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042197
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    69   5e-10
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali...    67   1e-09
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              66   3e-09
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    66   3e-09
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    65   4e-09

>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +2

Query: 134 VSWHRLIWFTNKIPRLSFISWLALRDGLKTLQRLKQWNFIASDVCVLCNRGVETEEHL 307
           VSWH+ +WFTN++P+ +FISW+   + L T  RL+ W  I    CVLCN   ET +HL
Sbjct: 580 VSWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHL 637


>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 543

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 27/57 (47%), Positives = 37/57 (64%)
 Frame = +2

Query: 137 SWHRLIWFTNKIPRLSFISWLALRDGLKTLQRLKQWNFIASDVCVLCNRGVETEEHL 307
           SWH+ +WFTN++P+ +FISW+   + L T  RL+ W  I    CVLCN   ET +HL
Sbjct: 453 SWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHL 509


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 27/58 (46%), Positives = 37/58 (63%)
 Frame = +2

Query: 134 VSWHRLIWFTNKIPRLSFISWLALRDGLKTLQRLKQWNFIASDVCVLCNRGVETEEHL 307
           V+WH  IWF +  P+ SF +WLA+++ L T  ++ QWN   S  CVLCN  +ET  HL
Sbjct: 484 VTWHMGIWFAHATPKFSFCAWLAVQNRLSTGDKMLQWNRRLSPTCVLCNNNIETRNHL 541


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = +2

Query: 110  RIRQPKQ*VSWHRLIWFTNKIPRLSFISWLALRDGLKTLQRLKQWNFIASDVCVLCNRGV 289
            +IR+      WH+ IWF+   P+ +FISWLA  D L T  ++  WN   S VCVLCN   
Sbjct: 1229 QIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISA 1288

Query: 290  ETEEHL 307
            E+ +HL
Sbjct: 1289 ESRDHL 1294


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/65 (44%), Positives = 44/65 (67%)
 Frame = +2

Query: 113 IRQPKQ*VSWHRLIWFTNKIPRLSFISWLALRDGLKTLQRLKQWNFIASDVCVLCNRGVE 292
           I +PK+  +WH+ +WF ++ P+ SF  WLA+ + L T QR++ WN  +S  CVLCN  +E
Sbjct: 753 ICKPKK-EAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLE 811

Query: 293 TEEHL 307
           T +HL
Sbjct: 812 TRDHL 816