BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042182
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              74   2e-11
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    72   6e-11
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             71   1e-10
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    69   5e-10
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   67   2e-09

>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 36/97 (37%), Positives = 57/97 (58%)
 Frame = +2

Query: 2   LTQATTKGELKLHYKYNEAVITHLSFVDDLIAFMNGDVATVRSLIGALGKFRTCYGLEVN 181
           L QA +  +   H +  E  +THLSF DDL+   +G V ++  ++     F    GL+++
Sbjct: 205 LDQAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKIS 264

Query: 182 VGKSQVFVAGMNEDMCEEAKGVLQFPVGTLPVKYLGL 292
           + KS +++AG+ ED+  E +   QF VG LPV+YLGL
Sbjct: 265 MEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGL 301


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/97 (36%), Positives = 54/97 (55%)
 Frame = +2

Query: 2   LTQATTKGELKLHYKYNEAVITHLSFVDDLIAFMNGDVATVRSLIGALGKFRTCYGLEVN 181
           L +AT +     H +  +  +THLSF DDL+   +G V ++  ++     F  C GL ++
Sbjct: 60  LDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRIS 119

Query: 182 VGKSQVFVAGMNEDMCEEAKGVLQFPVGTLPVKYLGL 292
           + KS V+ AG++    +E      F VGTLPV+YLGL
Sbjct: 120 MEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGL 156


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 55/97 (56%)
 Frame = +2

Query: 2   LTQATTKGELKLHYKYNEAVITHLSFVDDLIAFMNGDVATVRSLIGALGKFRTCYGLEVN 181
           L QA + G+L+LH K    ++THL F DDL+ F      +++++   L  F    GLEVN
Sbjct: 42  LDQAASIGQLQLHSKCANPLLTHLIFADDLVIFSKASRQSMQAVQNCLNWFGRNSGLEVN 101

Query: 182 VGKSQVFVAGMNEDMCEEAKGVLQFPVGTLPVKYLGL 292
            GK ++F+ G+ +   +E    +   +G  P+KYLGL
Sbjct: 102 TGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGL 138


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 33/97 (34%), Positives = 55/97 (56%)
 Frame = +2

Query: 2   LTQATTKGELKLHYKYNEAVITHLSFVDDLIAFMNGDVATVRSLIGALGKFRTCYGLEVN 181
           L +A  + +   H +  +  +THLSF DDL+   +G V ++  ++     F  C  L+++
Sbjct: 8   LDKAAGQRKFGYHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFDTFAKCSDLKIS 67

Query: 182 VGKSQVFVAGMNEDMCEEAKGVLQFPVGTLPVKYLGL 292
           + KS V++AG++    +E      F VGTLPV+YLGL
Sbjct: 68  MEKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGL 104


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%)
 Frame = +2

Query: 2   LTQATTKGELKLHYKYNEAVITHLSFVDDLIAFMNGDVATVRSLIGALGKFRTCYGLEVN 181
           L +   +  L LH K +  VITHL+F DD++ F +G+  ++  +   L  F    GL +N
Sbjct: 125 LDRCAAESRLSLHPKCHSPVITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLN 184

Query: 182 VGKSQVFVAGMNEDMCEEAKGVLQFPVGTLPVKYLGL 292
             K+++F+ G+N         V+ F  G LPV+YLG+
Sbjct: 185 TEKTEIFLRGLNGTEASTLCAVIGFTRGYLPVRYLGV 221