BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042173
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    71   1e-10
ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp....    70   2e-10
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    69   3e-10
gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japo...    64   1e-08
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    63   3e-08

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/84 (36%), Positives = 52/84 (61%)
 Frame = +1

Query: 1   GGLAIFWKDNIQLEILGATPNHITGKLSNYFSNSDWFFSFIYGEPISYKRKRVWDELYDM 180
           GGLA+ WKD++Q+++L +    I   L   + + +++ + IYGEP+  +R  +W+ L  +
Sbjct: 66  GGLALMWKDSVQIKVLQSDKRLIDALL--IWQDKEFYLTCIYGEPVQAERGELWERLTRL 123

Query: 181 ALLIPGPWILFGDFNSISSPLEKV 252
            L   GPW+L GDFN +  P EK+
Sbjct: 124 GLSRSGPWMLTGDFNELVDPSEKI 147


>ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297339749|gb|EFH70166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 110

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 54/84 (64%)
 Frame = +1

Query: 1   GGLAIFWKDNIQLEILGATPNHITGKLSNYFSNSDWFFSFIYGEPISYKRKRVWDELYDM 180
           GGLA+FWKD+  +EIL +    I  K+     +  ++ S +YG+P+++ R+ VWD+L D+
Sbjct: 16  GGLALFWKDSYNVEILFSDSRIIDAKVK--LGSLIFYISCVYGDPVAHLRQIVWDKLIDI 73

Query: 181 ALLIPGPWILFGDFNSISSPLEKV 252
           ++L   PW++ GD N I +  EK+
Sbjct: 74  SVLRNDPWLVLGDLNEIMNNSEKL 97


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 34/84 (40%), Positives = 51/84 (60%)
 Frame = +1

Query: 1   GGLAIFWKDNIQLEILGATPNHITGKLSNYFSNSDWFFSFIYGEPISYKRKRVWDELYDM 180
           GGLAIFWK ++++E L A  N +  ++S+   N  WF S +YG P+++ R ++W+ L  +
Sbjct: 65  GGLAIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVYGLPVTHMRPKLWEHLNSI 122

Query: 181 ALLIPGPWILFGDFNSISSPLEKV 252
            L     W L GDFN I S  EK+
Sbjct: 123 GLKRAEAWCLIGDFNDIRSNDEKL 146


>gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 27/77 (35%), Positives = 40/77 (51%)
 Frame = +1

Query: 1   GGLAIFWKDNIQLEILGATPNHITGKLSNYFSNSDWFFSFIYGEPISYKRKRVWDELYDM 180
           GGLA+FW + + +E+L     HI   +        W  +F+YGEP    R R+W  L D+
Sbjct: 490 GGLALFWHETVYVEVLNMNERHIDAYVRMTVDGPLWHVTFVYGEPCVENRHRMWSLLEDI 549

Query: 181 ALLIPGPWILFGDFNSI 231
                 PW++ GDFN +
Sbjct: 550 RQSSDLPWLVMGDFNEV 566


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/84 (36%), Positives = 47/84 (55%)
 Frame = +1

Query: 1   GGLAIFWKDNIQLEILGATPNHITGKLSNYFSNSDWFFSFIYGEPISYKRKRVWDELYDM 180
           GGLA+ WKD+++L  L     HI   +S   +N +++ S +YG P   +R  +W    ++
Sbjct: 447 GGLALLWKDSVRLSNLYQDDRHIDVHIS--INNINFYLSRVYGHPCQSERHSLWTHFENL 504

Query: 181 ALLIPGPWILFGDFNSISSPLEKV 252
           +     PWIL GDFN I S  EK+
Sbjct: 505 SKTRNDPWILIGDFNEILSNNEKI 528