BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042154
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi...   158   5e-37
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]   158   5e-37
ref|XP_002523294.1| pentatricopeptide repeat-containing protein,...   157   9e-37
ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
ref|NP_197146.1| pentatricopeptide repeat-containing protein [Ar...   137   7e-31

>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
           gi|296089757|emb|CBI39576.3| unnamed protein product
           [Vitis vinifera]
          Length = 586

 Score =  158 bits (399), Expect = 5e-37
 Identities = 73/96 (76%), Positives = 82/96 (85%)
 Frame = +1

Query: 1   KSQLKCSENLFVMVIRNYGIASRINFAVRTFLRIKEFGIERSVRSFNTLLNALVQNKRYD 180
           KSQ+KC ENLF+ VIRNYG A R   A+RTFLRI  FG++ SVRSFNTLLN LVQNKR+D
Sbjct: 163 KSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFD 222

Query: 181 LVHFLFKNCNNKFGIVPNVFTCNILVKALCKKNDVE 288
           LVH +FKNC  KFGIVPNVFTCNILVKALCKKND++
Sbjct: 223 LVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDID 258


>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  158 bits (399), Expect = 5e-37
 Identities = 73/96 (76%), Positives = 82/96 (85%)
 Frame = +1

Query: 1   KSQLKCSENLFVMVIRNYGIASRINFAVRTFLRIKEFGIERSVRSFNTLLNALVQNKRYD 180
           KSQ+KC ENLF+ VIRNYG A R   A+RTFLRI  FG++ SVRSFNTLLN LVQNKR+D
Sbjct: 163 KSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFD 222

Query: 181 LVHFLFKNCNNKFGIVPNVFTCNILVKALCKKNDVE 288
           LVH +FKNC  KFGIVPNVFTCNILVKALCKKND++
Sbjct: 223 LVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDID 258


>ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537382|gb|EEF39010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 544

 Score =  157 bits (397), Expect = 9e-37
 Identities = 69/96 (71%), Positives = 87/96 (90%)
 Frame = +1

Query: 1   KSQLKCSENLFVMVIRNYGIASRINFAVRTFLRIKEFGIERSVRSFNTLLNALVQNKRYD 180
           KSQ+KC EN+F+ VIRNYG+A + +FA+RTF+RI++F ++RSVRS NTLLNA VQNKRYD
Sbjct: 123 KSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYD 182

Query: 181 LVHFLFKNCNNKFGIVPNVFTCNILVKALCKKNDVE 288
           LVH +FKNC +K+G++PNVFTCNIL+KALCKKNDVE
Sbjct: 183 LVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVE 218


>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
           gi|449492939|ref|XP_004159147.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  142 bits (358), Expect = 3e-32
 Identities = 67/96 (69%), Positives = 80/96 (83%)
 Frame = +1

Query: 4   SQLKCSENLFVMVIRNYGIASRINFAVRTFLRIKEFGIERSVRSFNTLLNALVQNKRYDL 183
           S + CSE+LF+ VIR+YG+ASR   A++TFLRI+ FG+ RSVRS NTLLNALVQN R+  
Sbjct: 115 SGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSS 174

Query: 184 VHFLFKNCNNKFGIVPNVFTCNILVKALCKKNDVEG 291
           VH LFK   +KFG+VPNVFTCNIL+KALCKKNDVEG
Sbjct: 175 VHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEG 210


>ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
           gi|9759124|dbj|BAB09609.1| salt-inducible protein-like
           [Arabidopsis thaliana] gi|332004907|gb|AED92290.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 535

 Score =  137 bits (346), Expect = 7e-31
 Identities = 60/93 (64%), Positives = 77/93 (82%)
 Frame = +1

Query: 10  LKCSENLFVMVIRNYGIASRINFAVRTFLRIKEFGIERSVRSFNTLLNALVQNKRYDLVH 189
           +KC ENLF+ ++RNYG+A R   ++R FLRI +FG++RSVRS NTLLN L+QN+R+DLVH
Sbjct: 116 IKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVH 175

Query: 190 FLFKNCNNKFGIVPNVFTCNILVKALCKKNDVE 288
            +FKN    FGI PN+FTCN+LVKALCKKND+E
Sbjct: 176 AMFKNSKESFGITPNIFTCNLLVKALCKKNDIE 208