BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042021
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    66   3e-09
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    64   1e-08
ref|XP_002533890.1| conserved hypothetical protein [Ricinus comm...    56   4e-06

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/82 (41%), Positives = 49/82 (59%)
 Frame = -1

Query: 255 DVRWIPPIGCEIKINTYGSVLGAPSRGVGGCICQNNELEVVGVLATGLGQITCFEAKCIA 76
           ++ W+PP G  +KIN  GSV+G+PS G  G I + ++    G  A  +G  T  EA+  A
Sbjct: 242 EIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSA 301

Query: 75  IVLAAEKAVEVNCTRLWIEADS 10
            + A EKA E++ T +WIE DS
Sbjct: 302 CMFAIEKAKELHLTNIWIETDS 323


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/82 (37%), Positives = 47/82 (57%)
 Frame = -1

Query: 252 VRWIPPIGCEIKINTYGSVLGAPSRGVGGCICQNNELEVVGVLATGLGQITCFEAKCIAI 73
           +R  P +   +KIN  GS  GAPS G  G + +N +   +G  A  +G  TCF+A+  A 
Sbjct: 1   MRISPAVQGRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAA 60

Query: 72  VLAAEKAVEVNCTRLWIEADSQ 7
           + A EK++E N   +W+E DS+
Sbjct: 61  IFAIEKSIEYNLRDIWLETDSK 82


>ref|XP_002533890.1| conserved hypothetical protein [Ricinus communis]
           gi|223526154|gb|EEF28490.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 155

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/104 (32%), Positives = 47/104 (45%)
 Frame = -1

Query: 321 SDLRVFSRL*VKWKHFPPPSIHDVRWIPPIGCEIKINTYGSVLGAPSRGVGGCICQNNEL 142
           SDL +  RL V        S+  V W  P    IKIN  G+   AP     G + QN+E 
Sbjct: 6   SDLAILRRLRVDLAPCKVTSVISVIWFKPSLEWIKINIGGAARQAPRLSGAGGVFQNHES 65

Query: 141 EVVGVLATGLGQITCFEAKCIAIVLAAEKAVEVNCTRLWIEADS 10
           + +      LG    FEAK + ++    K +  + T +WIE DS
Sbjct: 66  KAIASSINSLGISFAFEAKLVVVIFVVSKVLSFDLTPIWIECDS 109