BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042020
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32614.3| unnamed protein product [Vitis vinifera]              187   6e-46
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   187   6e-46
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi...   184   6e-45
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   182   2e-44
ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|2...   178   4e-43

>emb|CBI32614.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  187 bits (476), Expect = 6e-46
 Identities = 97/129 (75%), Positives = 112/129 (86%)
 Frame = -3

Query: 387 DQLLLSLLKQRKTEDAWQLYSQSSTHYLPNPTCLSRLVCQLSYHNTKESLTRAQTIIRRL 208
           +Q LL+LL+QRKTE+AW  Y Q +   LP+PTCLSRLV QLSY NT ++LTRAQ+II+RL
Sbjct: 89  NQTLLTLLRQRKTEEAWLTYVQCTQ--LPSPTCLSRLVSQLSYQNTHQALTRAQSIIQRL 146

Query: 207 REEGQLHRLDANSLGLLAMCAAKAGSVLYASSIIKSMLRSGYLPHVKAWSAVVSRLAASA 28
           R E QLHRLDANSLGLLA+ AAKAG  LYA+S+IKSMLRSGYLPHVKAWSAVVSRLAAS 
Sbjct: 147 RNERQLHRLDANSLGLLAVSAAKAGHTLYAASLIKSMLRSGYLPHVKAWSAVVSRLAASG 206

Query: 27  DDGPVDALK 1
           DDGP++ALK
Sbjct: 207 DDGPLEALK 215


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  187 bits (476), Expect = 6e-46
 Identities = 97/129 (75%), Positives = 112/129 (86%)
 Frame = -3

Query: 387 DQLLLSLLKQRKTEDAWQLYSQSSTHYLPNPTCLSRLVCQLSYHNTKESLTRAQTIIRRL 208
           +Q LL+LL+QRKTE+AW  Y Q +   LP+PTCLSRLV QLSY NT ++LTRAQ+II+RL
Sbjct: 81  NQTLLTLLRQRKTEEAWLTYVQCTQ--LPSPTCLSRLVSQLSYQNTHQALTRAQSIIQRL 138

Query: 207 REEGQLHRLDANSLGLLAMCAAKAGSVLYASSIIKSMLRSGYLPHVKAWSAVVSRLAASA 28
           R E QLHRLDANSLGLLA+ AAKAG  LYA+S+IKSMLRSGYLPHVKAWSAVVSRLAAS 
Sbjct: 139 RNERQLHRLDANSLGLLAVSAAKAGHTLYAASLIKSMLRSGYLPHVKAWSAVVSRLAASG 198

Query: 27  DDGPVDALK 1
           DDGP++ALK
Sbjct: 199 DDGPLEALK 207


>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
           gi|449483612|ref|XP_004156638.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score =  184 bits (467), Expect = 6e-45
 Identities = 94/134 (70%), Positives = 113/134 (84%)
 Frame = -3

Query: 402 ATTNNDQLLLSLLKQRKTEDAWQLYSQSSTHYLPNPTCLSRLVCQLSYHNTKESLTRAQT 223
           ++++ +Q LL LL+QRKT++AW  Y+Q +   LP+PTCLSRLV QLSY NT  SLTRAQ+
Sbjct: 63  SSSSLEQRLLLLLRQRKTDEAWITYTQCND--LPSPTCLSRLVSQLSYQNTPSSLTRAQS 120

Query: 222 IIRRLREEGQLHRLDANSLGLLAMCAAKAGSVLYASSIIKSMLRSGYLPHVKAWSAVVSR 43
           I+ RLR++ QLHRLDANSLGLLA+ AAKAG  LYA S+IKSMLRSGYLPHVKAWSAVVSR
Sbjct: 121 ILTRLRQDNQLHRLDANSLGLLAVAAAKAGHTLYACSVIKSMLRSGYLPHVKAWSAVVSR 180

Query: 42  LAASADDGPVDALK 1
           LAAS DDGP +A+K
Sbjct: 181 LAASPDDGPAEAIK 194


>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  182 bits (463), Expect = 2e-44
 Identities = 94/132 (71%), Positives = 109/132 (82%)
 Frame = -3

Query: 396 TNNDQLLLSLLKQRKTEDAWQLYSQSSTHYLPNPTCLSRLVCQLSYHNTKESLTRAQTII 217
           TNNDQ LLSLL+QR+T+ AW  YSQS    LPNPTCLSRLV QLSY NT  SL+RAQ+I+
Sbjct: 58  TNNDQTLLSLLRQRETDKAWIFYSQSPL--LPNPTCLSRLVSQLSYQNTPLSLSRAQSIL 115

Query: 216 RRLREEGQLHRLDANSLGLLAMCAAKAGSVLYASSIIKSMLRSGYLPHVKAWSAVVSRLA 37
            RLR+E QLHRLDANSLGLLA+ A K+G + YA S+I SMLRSGYLPHVKAWSAV+SRL+
Sbjct: 116 TRLRQERQLHRLDANSLGLLAVSATKSGQLSYAVSLINSMLRSGYLPHVKAWSAVISRLS 175

Query: 36  ASADDGPVDALK 1
           +S DDGP  A+K
Sbjct: 176 SSPDDGPQQAIK 187


>ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score =  178 bits (452), Expect = 4e-43
 Identities = 93/135 (68%), Positives = 110/135 (81%)
 Frame = -3

Query: 405 LATTNNDQLLLSLLKQRKTEDAWQLYSQSSTHYLPNPTCLSRLVCQLSYHNTKESLTRAQ 226
           + +++NDQ LLSLL+QRKTE+AW LY+Q  T +LP PTCLSRLV QLSY NT  SL RAQ
Sbjct: 70  ITSSSNDQTLLSLLRQRKTEEAWVLYTQ--TPHLPPPTCLSRLVSQLSYQNTPLSLRRAQ 127

Query: 225 TIIRRLREEGQLHRLDANSLGLLAMCAAKAGSVLYASSIIKSMLRSGYLPHVKAWSAVVS 46
           +I+ RLR E QLHRLDANSLGLLA+ A K+G + YA S+I SMLRSGYLPHVKAWSAV+S
Sbjct: 128 SILTRLRHECQLHRLDANSLGLLAVSATKSGQLSYAFSLINSMLRSGYLPHVKAWSAVLS 187

Query: 45  RLAASADDGPVDALK 1
           RLA++ D GP  ALK
Sbjct: 188 RLASAPDGGPTRALK 202