BLASTX nr result

ID: Coptis23_contig00042010 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042010
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266...    90   2e-16
ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    64   1e-08
ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220...    64   1e-08
emb|CAN73782.1| hypothetical protein VITISV_004972 [Vitis vinifera]    59   3e-07
ref|XP_002299385.1| predicted protein [Populus trichocarpa] gi|2...    57   1e-06

>ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266712 [Vitis vinifera]
           gi|297738186|emb|CBI27387.3| unnamed protein product
           [Vitis vinifera]
          Length = 509

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1   GTLSIYEVGQVGTH-GYGFECVPDLIWPDVTESQSDCTISPRCICMHELPVLVXXXXXXX 177
           G LS+YEV +VG H  YG +C+PD +WP V   Q++C+ +   I       LV       
Sbjct: 133 GYLSLYEVAKVGQHFDYGVKCMPDRVWPPVIGKQTECSKAVGHIWRPTGASLVMQSSISC 192

Query: 178 XKTRRQHSPCTADVGSSIRHALISTLGSETSGGSVYIMKLNELLD 312
            K   +HSPCT D  S+I+H LI+TLGSET GGSVYI+ L   LD
Sbjct: 193 IKMVGKHSPCTIDDQSAIQHVLITTLGSETIGGSVYILNLTRPLD 237


>ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101230256 [Cucumis sativus]
          Length = 515

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1   GTLSIYEVGQVGTH-GYGFECVPDLIWPDVTESQSDCTISPRCICMHELPVLVXXXXXXX 177
           G+LS + VG    H G+   C P+L+WP   E+Q    + P  I       L        
Sbjct: 139 GSLSFFGVGGGDQHIGHPVNCCPELVWPSARENQMFGEV-PGDIWQLSGASLQMSSNISC 197

Query: 178 XKTRRQHSPCTADVGSSIRHALISTLGSETSGGSVYIMKLNELLD 312
            K  ++  P   D  S I+HALISTLGS+ SGGSVYI+ L E LD
Sbjct: 198 IKLFKKRFPSVHDEVSDIQHALISTLGSDVSGGSVYILNLVEPLD 242


>ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220880 [Cucumis sativus]
          Length = 515

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1   GTLSIYEVGQVGTH-GYGFECVPDLIWPDVTESQSDCTISPRCICMHELPVLVXXXXXXX 177
           G+LS + VG    H G+   C P+L+WP   E+Q    + P  I       L        
Sbjct: 139 GSLSFFGVGGGDQHIGHPVNCCPELVWPSARENQMFGEV-PGDIWQLSGASLQMSSNISC 197

Query: 178 XKTRRQHSPCTADVGSSIRHALISTLGSETSGGSVYIMKLNELLD 312
            K  ++  P   D  S I+HALISTLGS+ SGGSVYI+ L E LD
Sbjct: 198 IKLFKKRFPSVHDEVSDIQHALISTLGSDVSGGSVYILNLVEPLD 242


>emb|CAN73782.1| hypothetical protein VITISV_004972 [Vitis vinifera]
          Length = 354

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query: 1   GTLSIYEVGQVGTH-GYGFECVPDLIWPDVTESQSDCTISPRCICMHELPVLVXXXXXXX 177
           G LS+YEV +VG H  YG +C+PD +WP V   Q+ C+ +   I       LV       
Sbjct: 127 GYLSLYEVAKVGXHFDYGVKCMPDRVWPPVIGKQTXCSKAVGHIWRPTGASLVMQSSISC 186

Query: 178 XKTRRQHSPCTADVGSSIRHAL 243
            K   +HSPCT D  S+I+H L
Sbjct: 187 IKMVGKHSPCTIDDQSAIQHVL 208


>ref|XP_002299385.1| predicted protein [Populus trichocarpa] gi|222846643|gb|EEE84190.1|
           predicted protein [Populus trichocarpa]
          Length = 471

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = +1

Query: 1   GTLSIYEVGQVGTHGYGFECVPDLIWPDVTESQSDCTISPRCI 129
           G+LS++EVG+VG H +G EC+PD +WP + E +++C   P CI
Sbjct: 136 GSLSLFEVGKVGEHNHGVECIPDRMWPVIEEKRAECGKDPGCI 178


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