BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041993
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519859.1| leucine-rich transmembrane proteins, putativ...    60   2e-07
ref|XP_001769340.1| predicted protein [Physcomitrella patens sub...    56   4e-06
ref|XP_003442072.1| PREDICTED: F-box/LRR-repeat protein 20-like ...    55   6e-06
gb|ACN40032.1| unknown [Picea sitchensis]                              55   6e-06
emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]    55   8e-06

>ref|XP_002519859.1| leucine-rich transmembrane proteins, putative [Ricinus communis]
           gi|223540905|gb|EEF42463.1| leucine-rich transmembrane
           proteins, putative [Ricinus communis]
          Length = 363

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 12/104 (11%)
 Frame = -1

Query: 288 LKTLLLNGCSALKTVVSHLQRLQSLETLDLSGCHSIEDMNSFT-PVMPKLQYLNLSEVTG 112
           L+ LLL  C  +K +  ++ +L+ LE LDLSGC S+ ++   +   MP+LQ LNLSE   
Sbjct: 249 LRELLLRNCVCVKKL-QNVNQLKRLEFLDLSGCRSLTEIQEGSFEQMPRLQTLNLSETKV 307

Query: 111 VITLSL----------LRGCPSLEEV-KLEGCSGLEVVDLSGTK 13
               SL          LR C SLE++  LE  S LEV+DLSG++
Sbjct: 308 KFLPSLCGPGNLCHLQLRNCTSLEKLFPLESLSKLEVLDLSGSR 351


>ref|XP_001769340.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162679446|gb|EDQ65894.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 524

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
 Frame = -1

Query: 288 LKTLLLNGCSALKTVVSHLQRLQSLETLDLSGCHSIEDMNSFTPVMPKLQYLNLSEVTGV 109
           L  L L+GCS+L ++ + L  L SL  LDLSGC S+  +++    +  L  L+LS  + +
Sbjct: 44  LTILDLSGCSSLTSLPNELANLSSLTILDLSGCSSLTSLSNELANLSSLTTLDLSGCSSL 103

Query: 108 ITL-SLLRGCPSLEEVKLEGCSGL-----EVVDLSGTKI 10
           I+L + L     LEE+ L GCS L     E+V+LS  K+
Sbjct: 104 ISLPNELTNLSFLEELVLSGCSSLTSLPNELVNLSSLKM 142


>ref|XP_003442072.1| PREDICTED: F-box/LRR-repeat protein 20-like isoform 1 [Oreochromis
           niloticus]
          Length = 436

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
 Frame = -1

Query: 288 LKTLLLNGC-----SALKTVVSHLQRLQSLETLDLSGCHSIEDM--NSFTPVMPKLQYLN 130
           L+ L L GC     SAL+T     Q  +++E L+L+GC  I D   NS +   PKL++L+
Sbjct: 93  LRKLSLRGCLGVGDSALRTFS---QNCRNIEVLNLNGCTKITDSTCNSLSKFCPKLKHLD 149

Query: 129 LSEVTGVITLSLL---RGCPSLEEVKLEGC-----SGLEVVDLSGTKIKCL 1
           L+  T +  LSL     GCP LE++ +  C      G++ +  S   +KCL
Sbjct: 150 LASCTSITNLSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRSCPGLKCL 200


>gb|ACN40032.1| unknown [Picea sitchensis]
          Length = 1071

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = -1

Query: 288  LKTLLLNGCSALKTVVSHLQRLQSLETLDLSGCHSIEDMNSFTPVMPKLQYLNLSEVTGV 109
            L+TL L+GCS L+T+   +  L  L+TL LSGC +++ +      +  LQ LNL   + +
Sbjct: 807  LQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTL 866

Query: 108  ITL-SLLRGCPSLEEVKLEGCSGLEVV 31
             TL  L+    SL+ + L+GCS L+ +
Sbjct: 867  QTLPDLVGNLKSLQTLDLDGCSTLQTL 893


>emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
          Length = 389

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 36/88 (40%), Positives = 51/88 (57%)
 Frame = -1

Query: 288 LKTLLLNGCSALKTVVSHLQRLQSLETLDLSGCHSIEDMNSFTPVMPKLQYLNLSEVTGV 109
           L+TL L+ C+ + T VS L  L SL TLDLS C  I D++  +  +  L+ L+LS  TG+
Sbjct: 137 LRTLDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGITDVSPLSE-LSSLRTLDLSHCTGI 194

Query: 108 ITLSLLRGCPSLEEVKLEGCSGLEVVDL 25
             +S L    SL E+ L  C+G+  V L
Sbjct: 195 TDVSPLSKLSSLHELDLSHCTGITDVSL 222