BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041976
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16398.3| unnamed protein product [Vitis vinifera]               91   1e-16
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    84   9e-15
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15
ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana] gi...    74   2e-11

>emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/71 (66%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
 Frame = +3

Query: 51  LHTRL--PHKEKP-NWKTNHTSNFSHRLLCLLENCKSMNQLKQIHTQMILTGLILDGFSV 221
           +HTR   PHKE P NW TNH+   S+  L LLE CKS++QLKQI +QM+LTGLI DGF+ 
Sbjct: 26  IHTRALSPHKENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFAS 85

Query: 222 SRLIAFCAISE 254
           SRLIAFCAISE
Sbjct: 86  SRLIAFCAISE 96


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 46/69 (66%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
 Frame = +3

Query: 54  HTRLPHKEKP-NWKTNHTSNFSHRLLCLLENCKSMNQLKQIHTQMILTGLILDGFSVSRL 230
           H+   HK  P +W T HT   S+ LL LLENCKS +QLKQI  QMILTGLILDGF+ SRL
Sbjct: 32  HSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRL 91

Query: 231 IAFCAISES 257
           I+FCAISES
Sbjct: 92  ISFCAISES 100


>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
 Frame = +3

Query: 9   FLITKRFPYQLVSFLHTR-LPH-KEKP-NWKTNHTSNFSHRLLCLLENCKSMNQLKQIHT 179
           F+    F    +  LHTR LPH K+KP NW  +H    S+ LL LLE C SM ++K+IH 
Sbjct: 16  FVPRSTFQIPFIFLLHTRSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHA 75

Query: 180 QMILTGLILDGFSVSRLIAFCAISE 254
           QMI TGLI DGF++SRL+AFCAISE
Sbjct: 76  QMISTGLISDGFALSRLVAFCAISE 100


>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
 Frame = +3

Query: 9   FLITKRFPYQLVSFLHTR-LPH-KEKP-NWKTNHTSNFSHRLLCLLENCKSMNQLKQIHT 179
           F+    F    +  LHTR LPH K+KP NW  +H    S+ LL LLE C SM ++K+IH 
Sbjct: 16  FVPRSTFQIPFIFLLHTRSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHA 75

Query: 180 QMILTGLILDGFSVSRLIAFCAISE 254
           QMI TGLI DGF++SRL+AFCAISE
Sbjct: 76  QMISTGLISDGFALSRLVAFCAISE 100


>ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
           gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
           gi|4544450|gb|AAD22358.1| hypothetical protein
           [Arabidopsis thaliana] gi|18086349|gb|AAL57637.1|
           At2g22410/F14M13.19 [Arabidopsis thaliana]
           gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis
           thaliana] gi|330252206|gb|AEC07300.1| protein slow
           growth 1 [Arabidopsis thaliana]
          Length = 681

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +3

Query: 69  HKEKP-NWKTNHTSNFSHRLLCLLENCKSMNQLKQIHTQMILTGLILDGFSVSRLIAFCA 245
           H++KP NW + H+    + LL LLE CK +  LKQI  QMI+ GLILD F+ SRLIAFCA
Sbjct: 37  HRDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCA 96

Query: 246 ISES 257
           +SES
Sbjct: 97  LSES 100