BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041931
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-17
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    81   8e-14
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    78   8e-13
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    78   8e-13
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  57   1e-06

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 47/94 (50%), Positives = 68/94 (72%)
 Frame = +2

Query: 2   GVCGIPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVAYIEFET 181
           G   I  + VK+PTRTV +K L  ++SSH L+E  SF  + I  F +G+SSS AY+EFE+
Sbjct: 490 GDIDISVALVKHPTRTVKIKQLTDDISSHQLKEALSFCRSGINVF-LGASSSNAYVEFES 548

Query: 182 DEAKEKAIASCSIPISGSKLSVFRIDAPVTTIVR 283
           ++AKE+A+A   + +SG +LS+FR+DAP TT+VR
Sbjct: 549 EDAKERALAKHFLQVSGKQLSIFRVDAPRTTVVR 582


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/90 (42%), Positives = 60/90 (66%)
 Frame = +2

Query: 14  IPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVAYIEFETDEAK 193
           +P + VK P+RTV +  L H+ SS+ ++E   F  + I+ F +GSS + A++EFET++ K
Sbjct: 578 VPVALVKEPSRTVKIHPLTHDFSSNQIKEALKFCRSNISKFILGSSRTDAFVEFETEDGK 637

Query: 194 EKAIASCSIPISGSKLSVFRIDAPVTTIVR 283
           E+A+A  SI I  ++L + RID P TT+ R
Sbjct: 638 ERALAEHSISICNTQLFISRIDIPRTTVAR 667


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 37/90 (41%), Positives = 58/90 (64%)
 Frame = +2

Query: 14  IPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVAYIEFETDEAK 193
           +P + VK P RTV +  L H+ SS+ ++E   F  + I+ F +GSS + A++EFET++ K
Sbjct: 564 VPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGK 623

Query: 194 EKAIASCSIPISGSKLSVFRIDAPVTTIVR 283
           E+A+A  SI I  ++L + RID P T + R
Sbjct: 624 ERALAEHSISICNTQLFISRIDIPRTIVAR 653


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|11994322|dbj|BAB02281.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 37/90 (41%), Positives = 58/90 (64%)
 Frame = +2

Query: 14  IPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVAYIEFETDEAK 193
           +P + VK P RTV +  L H+ SS+ ++E   F  + I+ F +GSS + A++EFET++ K
Sbjct: 604 VPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGK 663

Query: 194 EKAIASCSIPISGSKLSVFRIDAPVTTIVR 283
           E+A+A  SI I  ++L + RID P T + R
Sbjct: 664 ERALAEHSISICNTQLFISRIDIPRTIVAR 693


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/67 (40%), Positives = 44/67 (65%)
 Frame = +2

Query: 83  SHHLEETFSFSGARITAFFMGSSSSVAYIEFETDEAKEKAIASCSIPISGSKLSVFRIDA 262
           S+ ++E   F  + I+ F +GSS + A++EFET++ KE+A+A  SI I  ++L + RID 
Sbjct: 42  SNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDI 101

Query: 263 PVTTIVR 283
           P T + R
Sbjct: 102 PRTIVAR 108