BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041920
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40853.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   100   9e-20
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago t...    95   5e-18
ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t...    92   6e-17

>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/99 (54%), Positives = 67/99 (67%)
 Frame = +3

Query: 156 SQIFQSYTNHLRQCAETKSILELRKIHLRIKKSGFPHLSLGNKLIHAYLKCDSVDEARNL 335
           S+  Q Y++ ++QC   KSI ++ KI     K GF H SLGNKLI AYLKC SV  AR +
Sbjct: 75  SESLQLYSSLIQQCIGIKSITDITKIQSHALKRGFHH-SLGNKLIDAYLKCGSVVYARKV 133

Query: 336 FDEMPQRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEG 452
           FDE+P RHIV WNSMI+SYIR  R  E I +Y+ MV +G
Sbjct: 134 FDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172


>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  100 bits (250), Expect = 9e-20
 Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
 Frame = +3

Query: 39  NQIAVTHNRFSNFSRFL-HTQANHLSTLTLPFDENHNKTPSQIFQSYTNHLRQCAETKSI 215
           N +    NR S F + L H   +++    L   E    T     + Y++ ++QC   KSI
Sbjct: 39  NVLEREENRVSAFFKSLSHFSQSNIKIRKLCITETIQST-----KLYSSLIQQCIGIKSI 93

Query: 216 LELRKIHLRIKKSGFPHLSLGNKLIHAYLKCDSVDEARNLFDEMPQRHIVIWNSMISSYI 395
            ++ KI     K GF H SLGNKLI AYLKC SV  AR +FDE+P RHIV WNSMI+SYI
Sbjct: 94  TDITKIQSHALKRGFHH-SLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYI 152

Query: 396 RCKRYSEGIALYEMMVLEG 452
           R  R  E I +Y+ MV +G
Sbjct: 153 RNGRSKEAIDIYQRMVPDG 171


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/93 (50%), Positives = 63/93 (67%)
 Frame = +3

Query: 174 YTNHLRQCAETKSILELRKIHLRIKKSGFPHLSLGNKLIHAYLKCDSVDEARNLFDEMPQ 353
           Y++ + Q A TKS+  LR +H  + KSGF +  LG+KLI  Y+KC S+ EAR LFDE+P 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFDELPS 63

Query: 354 RHIVIWNSMISSYIRCKRYSEGIALYEMMVLEG 452
           RHIV WNSMISS+I   +  E +  Y  M++EG
Sbjct: 64  RHIVTWNSMISSHISHGKSKEAVEFYGNMLMEG 96


>ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|358344096|ref|XP_003636129.1| Pentatricopeptide
           repeat protein [Medicago truncatula]
           gi|355501824|gb|AES83027.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
           gi|355502064|gb|AES83267.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 662

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 46/93 (49%), Positives = 58/93 (62%)
 Frame = +3

Query: 174 YTNHLRQCAETKSILELRKIHLRIKKSGFPHLSLGNKLIHAYLKCDSVDEARNLFDEMPQ 353
           YT+ + QC   KS+  L+ +H  I KSG      G+KLI  Y+KC  + EAR LFDEMP 
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPN 63

Query: 354 RHIVIWNSMISSYIRCKRYSEGIALYEMMVLEG 452
           RHIV WNSMISS++   +  E I LY  M+ EG
Sbjct: 64  RHIVTWNSMISSHVSRGKTKEAIELYSNMLFEG 96


>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 676

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/93 (48%), Positives = 58/93 (62%)
 Frame = +3

Query: 174 YTNHLRQCAETKSILELRKIHLRIKKSGFPHLSLGNKLIHAYLKCDSVDEARNLFDEMPQ 353
           YT+ + Q    KS+  L+ +H  I KSG      G+KLI  Y+KC  + EAR LFDEMP 
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPN 63

Query: 354 RHIVIWNSMISSYIRCKRYSEGIALYEMMVLEG 452
           RHIV WNSMISS++   +  E I LY+ M+ EG
Sbjct: 64  RHIVTWNSMISSHVSRGKTKEAIELYDNMLFEG 96