BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041828
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_740260.1| hypothetical chloroplast RF1 [Liriodendron tuli...   190   1e-46
ref|NP_862813.1| Ycf1 protein [Calycanthus floridus var. glaucus...   188   5e-46
ref|YP_006073162.1| hypothetical protein RF1 (chloroplast) [Elae...   187   8e-46
gb|AEX94015.1| hypothetical chloroplast RF19 (chloroplast) [Dory...   187   1e-45
ref|YP_007474593.1| photosystem I assembly protein Ycf1 (chlorop...   186   2e-45

>ref|YP_740260.1| hypothetical chloroplast RF1 [Liriodendron tulipifera]
            gi|118574755|sp|Q0G9G1.1|YCF1_LIRTU RecName:
            Full=Putative membrane protein ycf1; Short=RF1
            gi|113201052|gb|ABI32567.1| hypothetical chloroplast RF1
            [Liriodendron tulipifera]
          Length = 1835

 Score =  190 bits (482), Expect = 1e-46
 Identities = 86/108 (79%), Positives = 97/108 (89%)
 Frame = -3

Query: 326  SLLVIQSFFRKNIILPSLIIAKNIVRILLFQLPEWYEDWEEWSREIHVKCTYNGVQLSET 147
            S+LV QS  RK I+LPSLIIAKN+ R+LLFQ PEWYEDW+EW+RE+HVKCTYNGVQLSET
Sbjct: 781  SMLVTQSILRKYIVLPSLIIAKNLGRMLLFQFPEWYEDWKEWNREMHVKCTYNGVQLSET 840

Query: 146  EFPKNWLTEGIQIKILFPFCLKPWHRSKLQSYHGDPMKTKGKKGNFSF 3
            EFPK+WLT+GIQIKILFPFCLKPWHRSKL+S+H D MK KGKK NF F
Sbjct: 841  EFPKDWLTDGIQIKILFPFCLKPWHRSKLRSHHRDRMKKKGKKENFCF 888


>ref|NP_862813.1| Ycf1 protein [Calycanthus floridus var. glaucus]
            gi|75146316|sp|Q7YJS6.1|YCF1_CALFG RecName: Full=Putative
            membrane protein ycf1 gi|32399439|emb|CAD28780.1| Ycf1
            protein [Calycanthus floridus var. glaucus]
          Length = 1828

 Score =  188 bits (477), Expect = 5e-46
 Identities = 85/107 (79%), Positives = 96/107 (89%)
 Frame = -3

Query: 323  LLVIQSFFRKNIILPSLIIAKNIVRILLFQLPEWYEDWEEWSREIHVKCTYNGVQLSETE 144
            +LV QS  RK I+LPSLIIAKN+VR+LLFQ PEWYED +EW+RE+HVKCTYNGVQLSETE
Sbjct: 788  MLVTQSILRKYIVLPSLIIAKNLVRMLLFQFPEWYEDLKEWNREMHVKCTYNGVQLSETE 847

Query: 143  FPKNWLTEGIQIKILFPFCLKPWHRSKLQSYHGDPMKTKGKKGNFSF 3
            FPK+WLT+GIQIKILFPFCLKPWHRSKL+ +H DPMK KGKK NF F
Sbjct: 848  FPKDWLTDGIQIKILFPFCLKPWHRSKLRPHHRDPMKKKGKKDNFCF 894


>ref|YP_006073162.1| hypothetical protein RF1 (chloroplast) [Elaeis guineensis]
            gi|325305764|gb|ADZ10925.1| hypothetical protein RF1
            (chloroplast) [Elaeis guineensis]
          Length = 1829

 Score =  187 bits (475), Expect = 8e-46
 Identities = 88/108 (81%), Positives = 96/108 (88%)
 Frame = -3

Query: 326  SLLVIQSFFRKNIILPSLIIAKNIVRILLFQLPEWYEDWEEWSREIHVKCTYNGVQLSET 147
            S+LV QSF RK I+LPSLIIAKNIVRILLFQ PEWYED +EW REIHVKCTYNGVQLSET
Sbjct: 816  SMLVTQSFLRKYIVLPSLIIAKNIVRILLFQSPEWYEDLKEWDREIHVKCTYNGVQLSET 875

Query: 146  EFPKNWLTEGIQIKILFPFCLKPWHRSKLQSYHGDPMKTKGKKGNFSF 3
            EFPKNWLT+GIQIKILFPF LKPW RSK++S+H DPMK KGKK +F F
Sbjct: 876  EFPKNWLTDGIQIKILFPFFLKPWRRSKIRSHHRDPMKKKGKKEDFCF 923


>gb|AEX94015.1| hypothetical chloroplast RF19 (chloroplast) [Doryanthes palmeri]
          Length = 1858

 Score =  187 bits (474), Expect = 1e-45
 Identities = 86/108 (79%), Positives = 97/108 (89%)
 Frame = -3

Query: 326  SLLVIQSFFRKNIILPSLIIAKNIVRILLFQLPEWYEDWEEWSREIHVKCTYNGVQLSET 147
            S+LV QSF RK IILPSLIIAKN+ R+LLFQ PEWYED++EW+RE+HVKCTYNGVQLSET
Sbjct: 805  SMLVTQSFLRKYIILPSLIIAKNMGRMLLFQFPEWYEDFKEWNREMHVKCTYNGVQLSET 864

Query: 146  EFPKNWLTEGIQIKILFPFCLKPWHRSKLQSYHGDPMKTKGKKGNFSF 3
            EFP+NWLT+GIQIKILFPFCLKPW RSK++SYH D MK KGKK NF F
Sbjct: 865  EFPQNWLTDGIQIKILFPFCLKPWRRSKVRSYHRDQMKKKGKKENFCF 912


>ref|YP_007474593.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
            grandiflora] gi|372862899|gb|AEX98975.1| photosystem I
            assembly protein Ycf1 (chloroplast) [Magnolia
            grandiflora]
          Length = 1843

 Score =  186 bits (472), Expect = 2e-45
 Identities = 85/108 (78%), Positives = 95/108 (87%)
 Frame = -3

Query: 326  SLLVIQSFFRKNIILPSLIIAKNIVRILLFQLPEWYEDWEEWSREIHVKCTYNGVQLSET 147
            S+LV QS  RK I+LPSLIIAKN+ R+LLFQ PEWYEDW+EW+RE+HVKCTYNGVQLSET
Sbjct: 790  SMLVTQSILRKYIVLPSLIIAKNLGRMLLFQFPEWYEDWKEWNREMHVKCTYNGVQLSET 849

Query: 146  EFPKNWLTEGIQIKILFPFCLKPWHRSKLQSYHGDPMKTKGKKGNFSF 3
            EFPK+WLT+GIQIKILFPFCLKPWHRSKL+  H D MK KGKK NF F
Sbjct: 850  EFPKDWLTDGIQIKILFPFCLKPWHRSKLRFDHRDRMKKKGKKENFGF 897