BLASTX nr result
ID: Coptis23_contig00041743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00041743
(398 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi... 140 8e-32
ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi... 128 6e-28
ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ... 118 4e-25
gb|AFW84010.1| hypothetical protein ZEAMMB73_045792 [Zea mays] 105 2e-23
ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containi... 104 2e-22
>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial [Vitis vinifera]
Length = 828
Score = 140 bits (354), Expect = 8e-32
Identities = 71/126 (56%), Positives = 91/126 (72%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
GR+VHG +RR+M LD S+ NS++DMY KC +K AE +F +PERDL+SWN MI+GYS
Sbjct: 297 GRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQ 356
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNNFLM 360
N S EAQ LF++L S C+ +LLA+L SCDS E L+FGE +HC QLKLGF+NN L
Sbjct: 357 NGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLA 416
Query: 361 LPILFL 378
+ L L
Sbjct: 417 VNSLML 422
Score = 75.5 bits (184), Expect(2) = 4e-12
Identities = 37/116 (31%), Positives = 67/116 (57%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
GR +HG + + D L N+++DMY KC L +E +F + RD+ISWN+M+ G ++
Sbjct: 92 GRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAY 151
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSN 348
N ++ F+++ +S + +SL +S+ EL FG+++H +KLG+ +
Sbjct: 152 NNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKD 207
Score = 20.4 bits (41), Expect(2) = 4e-12
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 366 DIVSWNTIIVG 398
DIVSWN ++ G
Sbjct: 241 DIVSWNAMLDG 251
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/106 (30%), Positives = 58/106 (54%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G S+HG ++ M D+ ++N+++ MY +C ++ A ++F R+L SWN MI+ +S
Sbjct: 501 GGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQ 560
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVH 318
N A LF + NE++++ +LS+C L G+ +H
Sbjct: 561 NKDGRRALELFCHIEFEP---NEITIVGILSACTQLGVLRHGKQIH 603
Score = 59.3 bits (142), Expect = 3e-07
Identities = 27/93 (29%), Positives = 53/93 (56%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+ +HG ++R +++ + + ++ DMY C L A +F PER + +WN+MI+ +
Sbjct: 599 GKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGF 658
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSC 279
+ +A LF E+R G + + +++LS+C
Sbjct: 659 HSNGGKAIELFHEMRECGTRPTKSTFISLLSAC 691
>ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Glycine max]
Length = 944
Score = 128 bits (321), Expect = 6e-28
Identities = 62/127 (48%), Positives = 89/127 (70%), Gaps = 3/127 (2%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLD-LSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYS 177
GR++HG+ +RR+M D + L NS++ MY KCN+++ AEL+F E+D +SWN MI+GYS
Sbjct: 414 GRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTAEKDTVSWNAMISGYS 473
Query: 178 HNVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDS--FEELEFGELVHCLQLKLGFSNN 351
HN S EAQ LF E+ GP+C+ ++ A+LSSC+S + FG+ VHC QLK GF N+
Sbjct: 474 HNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIHFGKSVHCWQLKSGFLNH 533
Query: 352 FLMLPIL 372
L++ IL
Sbjct: 534 ILLINIL 540
Score = 79.3 bits (194), Expect(2) = 3e-13
Identities = 38/117 (32%), Positives = 70/117 (59%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
GR++H ++ M +D+SL N+++DMY KC L +E ++ + +D +SWN+++ G +
Sbjct: 211 GRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLY 270
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNN 351
N +A F+ + S + + +SL +S+ S EL FG+ VH L +KLG+ ++
Sbjct: 271 NRHPEKALCYFKRMSFSEETADNVSLCCAISASSSLGELSFGQSVHGLGIKLGYKSH 327
Score = 20.4 bits (41), Expect(2) = 3e-13
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 366 DIVSWNTIIVG 398
DIVSWN ++ G
Sbjct: 358 DIVSWNAMMEG 368
Score = 70.9 bits (172), Expect = 1e-10
Identities = 38/106 (35%), Positives = 60/106 (56%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+HG V+ + D ++NS++ MY +C + A+++F +L SWN MI+ SH
Sbjct: 621 GKSLHGLTVKSPLGSDTRVQNSLITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSH 680
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVH 318
N S EA LF L+ NE++++ VLS+C L G+ VH
Sbjct: 681 NRESREALELFLNLQFEP---NEITIIGVLSACTQIGVLRHGKQVH 723
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+SVHG ++ + +S+ NS++ +Y +C +K AE +F + +D++SWN M+ G++
Sbjct: 312 GQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEGFAS 371
Query: 181 NVCSVEAQGLFQELRHSGPSCNEL-SLLAVLSSCDSFEELEFGELVHCLQLKLGFSNNFL 357
N E L +++ G ++ +L+ +L C G +H ++ ++ +
Sbjct: 372 NGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMISDHV 431
Query: 358 MLPILFLGTLS 390
ML +G S
Sbjct: 432 MLLNSLIGMYS 442
>ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513824|gb|AES95447.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 955
Score = 118 bits (296), Expect = 4e-25
Identities = 58/122 (47%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLD-LSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYS 177
GR++HG+ +RR M D L L+N ++DMY KCN+++ AEL+F + DL+SWN MI+GYS
Sbjct: 424 GRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAMISGYS 483
Query: 178 HNVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNNFL 357
N +AQ LF+EL G +C+ ++ A+LSSC+S L FG+ VH QLK GF N+ L
Sbjct: 484 QNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTL 543
Query: 358 ML 363
++
Sbjct: 544 LV 545
Score = 74.3 bits (181), Expect(2) = 8e-12
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPA--ELMFTILPERDLISWNTMIAGY 174
GR +H ++ M +D+SL N++++MY KC + + E +F + +D++SWN+++ G
Sbjct: 217 GRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGC 276
Query: 175 SHNVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNN 351
+N ++ F+ + S + +SL +S+C S EL FGE +H +KLG+ +N
Sbjct: 277 LYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDN 335
Score = 20.4 bits (41), Expect(2) = 8e-12
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 366 DIVSWNTIIVG 398
DIVSWN ++ G
Sbjct: 368 DIVSWNAMMEG 378
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/117 (31%), Positives = 61/117 (52%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+H ++ D ++NS++ MY +C + A +F +L +WN MI+ SH
Sbjct: 629 GKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSH 688
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNN 351
N S EA LF+ L+ NE ++++VLS+C L G+ VH + G+ N
Sbjct: 689 NKESREALELFRHLQFKP---NEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQN 742
>gb|AFW84010.1| hypothetical protein ZEAMMB73_045792 [Zea mays]
Length = 917
Score = 105 bits (261), Expect(2) = 2e-23
Identities = 53/119 (44%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 GRSVHGFIVRRKM-RLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYS 177
G ++HG+++R+ + R + S+ NS++D+YLKC+ A L+F +P RDLISWNTMI+GYS
Sbjct: 386 GETLHGYVIRKGLLREEPSMGNSLLDLYLKCDEPSNAGLLFMTMPRRDLISWNTMISGYS 445
Query: 178 -HNVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNN 351
+ EAQ +F+ L G SC+ ++LAV+ SC EEL FG+ +H LK GF+++
Sbjct: 446 RYGPLREEAQLMFKGLLSEGSSCSLATMLAVIPSCSIPEELSFGKALHSFSLKCGFTSS 504
Score = 28.5 bits (62), Expect(2) = 2e-23
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 339 VLKQFPDVADIVSWNTIIVG 398
++++ V+DI+SWNT+IVG
Sbjct: 528 LIERIIPVSDIISWNTVIVG 547
Score = 70.5 bits (171), Expect = 1e-10
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLD-LSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYS 177
G +HG + + L N+++DMY KC + AE++F +P RD SWN++I+G
Sbjct: 181 GMELHGMAAKSCLGAHCLGAWNALVDMYAKCGEFRSAEVVFHSMPCRDTTSWNSVISGSI 240
Query: 178 HNVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEEL-EFGELVHCLQLKLGFSN 348
N + + F+E+ S +E+SL +VLS+C ++L FGE VH +KLG+ +
Sbjct: 241 FNGLAEVSACYFREMSCSIFQPDEVSLSSVLSACSRLDDLFSFGESVHSCAVKLGYED 298
Score = 63.2 bits (152), Expect = 2e-08
Identities = 31/106 (29%), Positives = 59/106 (55%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+H I++ +L +KNS++ MY + + AEL+F + + +L SWN MI+G++
Sbjct: 593 GKSIHCMILKHLFASNLRVKNSLLTMYFRFGDTRSAELVFYSMGDTNLCSWNCMISGFAQ 652
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVH 318
N A +Q++ P NE+S++ ++ +C G+ +H
Sbjct: 653 NNKGWRALQFYQKMEDFEP--NEISVVGIICACTQLGGYRQGKSIH 696
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/108 (26%), Positives = 59/108 (54%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+HG + R + ++ + S++DMY KC L A +F E+ + WN++I+ +
Sbjct: 692 GKSIHGHVFRSVLHNNVFISASLVDMYCKCGRLDIAVRVFEASAEKSIAGWNSLISAFGF 751
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCL 324
+ +++ LF ++ SG + + +A+LS+C ++ G +CL
Sbjct: 752 HGHGMKSIDLFWKMHDSGMKATKSTFIALLSACSHSGLVDEGWKYYCL 799
Score = 59.3 bits (142), Expect = 3e-07
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLD-LSLKNSIMDMYLKC-NILKPAELMFTILPERDLISWNTMIAGY 174
G+++H F ++ +S N+++ MY+ C + L L+ I+P D+ISWNT+I G
Sbjct: 489 GKALHSFSLKCGFTSSGVSAVNALIHMYMSCGDPLAAFSLIERIIPVSDIISWNTVIVGC 548
Query: 175 SHNVCSVEAQGLFQELRHS-GPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNN 351
N +A +F+ + S + + +++++VLS+C L G+ +HC+ LK F++N
Sbjct: 549 LQNELHKDALEIFRFMYCSLAINPDSITIVSVLSACGDLNLLALGKSIHCMILKHLFASN 608
>ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Brachypodium distachyon]
Length = 924
Score = 104 bits (259), Expect(2) = 2e-22
Identities = 52/118 (44%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Frame = +1
Query: 1 GRSVHGFIVRRKM-RLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYS 177
G+++HG+I R+ + ++ SL NS++ +Y+KC+ A L+F +P RDLISWNTM++GYS
Sbjct: 393 GKAIHGYITRKCLFHVESSLGNSLLGLYMKCDDAYTANLLFRTMPIRDLISWNTMLSGYS 452
Query: 178 H-NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSN 348
+ EAQ +F+EL G SC ++LAV+ SC E+L FG+ VH LK GF++
Sbjct: 453 RDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAVHSFVLKYGFAS 510
Score = 26.2 bits (56), Expect(2) = 2e-22
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 360 VADIVSWNTIIVG 398
V+DI+SWNT +VG
Sbjct: 541 VSDIISWNTAVVG 553
Score = 69.7 bits (169), Expect = 2e-10
Identities = 33/120 (27%), Positives = 67/120 (55%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+H ++R + +L +KN+++ MY + + AEL+F L +R+L SWN M++G++
Sbjct: 599 GKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESAELIFYSLGDRNLCSWNCMVSGFAQ 658
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEELEFGELVHCLQLKLGFSNNFLM 360
N A +Q++ P NE+ ++++ +C ++ G+ +H +K NN +
Sbjct: 659 NNDGRRALQFYQKMEKFVP--NEMCTVSIICACTQLRDVRHGKSIHGHVVKSDLQNNVFL 716
Score = 68.9 bits (167), Expect = 4e-10
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G ++H V+R++ D++L N+++DMY KC +E +F +P D SWN++ G +
Sbjct: 189 GMALHAAAVKRRLDTDMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTF 248
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSCDSFEEL-EFGELVHCLQLKLGFSN 348
N S + F+E+ +E++L +V+S+ E L FGE VH +KLG+ +
Sbjct: 249 NGLSEVSACYFREMIRLAVQADEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYED 305
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKC-NILKPAELMFTILPERDLISWNTMIAGYS 177
G++VH F+++ +S+ N++M MY+ C + L L+ +I+P D+ISWNT + G
Sbjct: 496 GKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIISWNTAVVGCV 555
Query: 178 HNVCSVEAQGLFQELRHSGP-SCNELSLLAVLSSCDSFEELEFGELVHCLQLK 333
N A FQ + S P + + ++L++VLS+C + + G+ +H + LK
Sbjct: 556 QNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSACGTLKLQSLGKSIHSMALK 608
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/93 (31%), Positives = 53/93 (56%)
Frame = +1
Query: 1 GRSVHGFIVRRKMRLDLSLKNSIMDMYLKCNILKPAELMFTILPERDLISWNTMIAGYSH 180
G+S+HG +V+ ++ ++ L S++DMY KC L A +F E+ + WN+MI+ +
Sbjct: 698 GKSIHGHVVKSDLQNNVFLSASLVDMYSKCGRLDIAVRVFESSTEKSIACWNSMISAFGF 757
Query: 181 NVCSVEAQGLFQELRHSGPSCNELSLLAVLSSC 279
+ + + LF + HSG + +A+LS+C
Sbjct: 758 HGHGLRSIELFCSMIHSGMKATRSTFIALLSAC 790