BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041731
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|2...   158   4e-37
ref|XP_003596787.1| Pentatricopeptide repeat-containing protein ...   154   5e-36
ref|XP_002523781.1| pentatricopeptide repeat-containing protein,...   153   1e-35
ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containi...   152   3e-35

>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  169 bits (427), Expect = 3e-40
 Identities = 82/121 (67%), Positives = 98/121 (80%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AMLSGYAQ+ + EGAVK+F ++ KEG++PN F  SSV++AC  P ASVEQGKQ H  SIK
Sbjct: 463 AMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 522

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           +GF N LCVSSAL TMYAKRGN+ESA EVFKRQ DRD +S NSMIS + QHG G+K+L+I
Sbjct: 523 SGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKI 582

Query: 363 F 365
           F
Sbjct: 583 F 583



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 47/121 (38%), Positives = 73/121 (60%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           ++L+GY Q    E A+KLF++M  EGIKPN F  ++V+       A VE+G Q H + IK
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGA-VEKGVQVHTMVIK 221

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           +G  +T+ V +++  MY+K   V  A+ VF    +R+ +S NSMI+ F  +G   +A E+
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 363 F 365
           F
Sbjct: 282 F 282



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/121 (31%), Positives = 71/121 (58%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           A++SGY Q    + A+ LF +M +EG++PN F  S++++A      S     Q H + +K
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPS-----QIHALVVK 420

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           T + N+  V +AL+  Y+K G+   A ++F+   ++D ++ ++M+S + Q G    A++I
Sbjct: 421 TNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKI 480

Query: 363 F 365
           F
Sbjct: 481 F 481


>ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|222849195|gb|EEE86742.1|
           predicted protein [Populus trichocarpa]
          Length = 480

 Score =  158 bits (400), Expect = 4e-37
 Identities = 76/121 (62%), Positives = 94/121 (77%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AM+ GYAQ+ + EGAV++F +M KE IKPN +  S +I+AC  P A VEQGKQ H  SIK
Sbjct: 77  AMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIK 136

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           + F N LCVSSAL TMY+KRG++ESA EVFKRQ +RD +S NS+IS + QHGYGRKALE+
Sbjct: 137 SRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEV 196

Query: 363 F 365
           F
Sbjct: 197 F 197



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 35/100 (35%), Positives = 56/100 (56%)
 Frame = +3

Query: 66  MLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIKTGFYNTLCVSSALATMYAKRG 245
           M +EGIKPN F  S++++A  G         + H  +IK  +  +  V +AL   Y KRG
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF-----EMHAQAIKRNYVKSPSVGTALLDAYVKRG 55

Query: 246 NVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEIF 365
           NV+ A +VF+R  ++D ++ ++MI  + Q G    A+ IF
Sbjct: 56  NVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIF 95


>ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355485835|gb|AES67038.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  154 bits (390), Expect = 5e-36
 Identities = 76/121 (62%), Positives = 90/121 (74%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AML+GYAQ    E A KLF +++KEGIKPN F  SSVI+AC  P A+ EQGKQ H  +IK
Sbjct: 464 AMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIK 523

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
               N LCVSSAL TMYAKRGN++SA EVFKRQ +RD +S NSMIS + QHG  +KALE+
Sbjct: 524 MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEV 583

Query: 363 F 365
           F
Sbjct: 584 F 584



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 38/121 (31%), Positives = 69/121 (57%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           ++L+GY+         +LF +M  EG+ PN + +S+VI+A       V  G Q H + +K
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNE-GVVGIGLQVHAMVVK 222

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
            GF   + V ++L ++Y++ G +  A++VF +   RD ++ NSMI+ + ++G   +  EI
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 363 F 365
           F
Sbjct: 283 F 283



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 38/121 (31%), Positives = 65/121 (53%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AM+SG  Q    + AV LF++M +EG+KPN F  S++++       S     + H   IK
Sbjct: 367 AMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS-----EMHAEVIK 421

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           T +  +  V +AL   Y K GN   A +VF+    +D ++ ++M++ + Q G   +A ++
Sbjct: 422 TNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKL 481

Query: 363 F 365
           F
Sbjct: 482 F 482


>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 661

 Score =  153 bits (387), Expect = 1e-35
 Identities = 74/121 (61%), Positives = 94/121 (77%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AM++GYAQ  + EGAVK+  +M K+G++PN +  SSVI+ACT P A+VEQGKQ H  SIK
Sbjct: 468 AMVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIK 527

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           + F + LCVSSAL TMYAKRG +ESA EVF+RQ  RD +S NSM+S + QHG+ RKALE+
Sbjct: 528 SRFNDALCVSSALVTMYAKRGEIESANEVFRRQGVRDLVSWNSMVSGYAQHGHARKALEV 587

Query: 363 F 365
           F
Sbjct: 588 F 588



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 45/121 (37%), Positives = 69/121 (57%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           ++L GYA       A++ F EM    IKPN F  ++V+ A     A  ++G Q H + IK
Sbjct: 167 SLLVGYAHNGLNMEALECFFEMQAGAIKPNPFTFATVLGALADSKAIADKGVQIHTMVIK 226

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
            GF  T+ V ++L  MY+K G V++A+ VF     RD IS NSM++ +  +G   +A+E+
Sbjct: 227 NGFEATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEM 286

Query: 363 F 365
           F
Sbjct: 287 F 287



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/120 (32%), Positives = 68/120 (56%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           A++SG+ Q    E AV LF EM +EG++PN +  S++++A       V    + H   IK
Sbjct: 371 AIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAA-----QPVVSPFEVHAQVIK 425

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           + +  +  V +AL   Y K GN+  A +VF+R  D+D ++ ++M++ + Q G    A++I
Sbjct: 426 SDYEKSPSVGTALLDAYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQTGDTEGAVKI 485



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 34/120 (28%), Positives = 60/120 (50%)
 Frame = +3

Query: 6   MLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIKT 185
           +L  Y++  +    V LF  + +  +  +G  LS V+ AC   ++  + G Q H   +K+
Sbjct: 67  LLFDYSRNNSHHEVVNLFVAIHRSDLLTDGSTLSCVLKACAC-LSCKKFGIQVHDYCVKS 125

Query: 186 GFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEIF 365
           GF   + V ++L  MY K   VE  + VF    +R+ +S  S++  +  +G   +ALE F
Sbjct: 126 GFLEDISVGTSLVDMYMKSEYVEEGKRVFDEMEERNVVSWTSLLVGYAHNGLNMEALECF 185


>ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  152 bits (384), Expect = 3e-35
 Identities = 73/121 (60%), Positives = 90/121 (74%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AML+GYAQ    E A K+F ++ +EGIKPN F   S+I+ACT P ASVEQGKQ H  +IK
Sbjct: 473 AMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIK 532

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
               N LCVSS+L T+YAKRGN+ESA E+FKRQ +RD +S NSMIS + QHG  +KALE+
Sbjct: 533 LRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEV 592

Query: 363 F 365
           F
Sbjct: 593 F 593



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/120 (30%), Positives = 63/120 (52%)
 Frame = +3

Query: 6   MLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIKT 185
           +L  Y++    + A+ LF  + + G+ P+ + +S V+S C G       G+Q H   +K 
Sbjct: 73  LLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTV-GEQVHCQCVKC 131

Query: 186 GFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEIF 365
           G  + L V ++L  MY K GNV   + VF    DRD +S NS+++ +  + +  +  E+F
Sbjct: 132 GLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELF 191



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/121 (33%), Positives = 67/121 (55%)
 Frame = +3

Query: 3   AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNGFVLSSVISACTGPMASVEQGKQCHGISIK 182
           AM+SGY Q  + + AV LF+ M +EG+KPN F  S++++       S     + H   IK
Sbjct: 376 AMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFIS-----EIHAEVIK 430

Query: 183 TGFYNTLCVSSALATMYAKRGNVESAQEVFKRQTDRDTISMNSMISCFGQHGYGRKALEI 362
           T +  +  V +AL   + K GN+  A +VF+    +D I+ ++M++ + Q G   +A +I
Sbjct: 431 TNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKI 490

Query: 363 F 365
           F
Sbjct: 491 F 491