BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041722
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU94800.1| RpoC2, partial (chloroplast) [Mammea americana]        115   5e-24
gb|AFU94791.1| RpoC2, partial (chloroplast) [Garcinia mangostana]     115   5e-24
gb|AEH42620.1| RNA polymerase beta subunit [Garcinia mangostana]      115   5e-24
gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia am...   115   5e-24
gb|AEH42622.1| RNA polymerase beta subunit [Mammea americana]         114   6e-24

>gb|AFU94800.1| RpoC2, partial (chloroplast) [Mammea americana]
          Length = 1630

 Score =  115 bits (287), Expect = 5e-24
 Identities = 60/77 (77%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
 Frame = +2

Query: 68  FSSLELQDRKSIR-NGLRVH*LVGMRGLMSDPQGQMIDLPIQSNLQEGLSLTESIISCYG 244
           F+S+ +      R N  +VH LVGMRGLMSDPQGQMIDLPIQSNL+EGLSLTE IISCYG
Sbjct: 135 FNSVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYG 194

Query: 245 ARKGVVDTAVRTSDAGY 295
           ARKGVVDTAVRTSDAGY
Sbjct: 195 ARKGVVDTAVRTSDAGY 211


>gb|AFU94791.1| RpoC2, partial (chloroplast) [Garcinia mangostana]
          Length = 1612

 Score =  115 bits (287), Expect = 5e-24
 Identities = 60/77 (77%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
 Frame = +2

Query: 68  FSSLELQDRKSIR-NGLRVH*LVGMRGLMSDPQGQMIDLPIQSNLQEGLSLTESIISCYG 244
           F+S+ +      R N  +VH LVGMRGLMSDPQGQMIDLPIQSNL+EGLSLTE IISCYG
Sbjct: 135 FNSVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYG 194

Query: 245 ARKGVVDTAVRTSDAGY 295
           ARKGVVDTAVRTSDAGY
Sbjct: 195 ARKGVVDTAVRTSDAGY 211


>gb|AEH42620.1| RNA polymerase beta subunit [Garcinia mangostana]
          Length = 1334

 Score =  115 bits (287), Expect = 5e-24
 Identities = 60/77 (77%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
 Frame = +2

Query: 68  FSSLELQDRKSIR-NGLRVH*LVGMRGLMSDPQGQMIDLPIQSNLQEGLSLTESIISCYG 244
           F+S+ +      R N  +VH LVGMRGLMSDPQGQMIDLPIQSNL+EGLSLTE IISCYG
Sbjct: 129 FNSVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYG 188

Query: 245 ARKGVVDTAVRTSDAGY 295
           ARKGVVDTAVRTSDAGY
Sbjct: 189 ARKGVVDTAVRTSDAGY 205


>gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia americana]
          Length = 1391

 Score =  115 bits (287), Expect = 5e-24
 Identities = 60/77 (77%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
 Frame = +2

Query: 68  FSSLELQDRKSIR-NGLRVH*LVGMRGLMSDPQGQMIDLPIQSNLQEGLSLTESIISCYG 244
           F+S+ +      R N  +VH LVGMRGLMSDPQGQMIDLPIQSNL+EGLSLTE IISCYG
Sbjct: 129 FNSVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYG 188

Query: 245 ARKGVVDTAVRTSDAGY 295
           ARKGVVDTAVRTSDAGY
Sbjct: 189 ARKGVVDTAVRTSDAGY 205


>gb|AEH42622.1| RNA polymerase beta subunit [Mammea americana]
          Length = 468

 Score =  114 bits (286), Expect = 6e-24
 Identities = 60/77 (77%), Positives = 64/77 (83%), Gaps = 1/77 (1%)
 Frame = +2

Query: 68  FSSLELQDRKSIR-NGLRVH*LVGMRGLMSDPQGQMIDLPIQSNLQEGLSLTESIISCYG 244
           F+S  +      R N  +VH LVGMRGLMSDPQGQMIDLPIQSNL+EGLSLTE IISCYG
Sbjct: 129 FNSFNIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYG 188

Query: 245 ARKGVVDTAVRTSDAGY 295
           ARKGVVDTAVRTSDAGY
Sbjct: 189 ARKGVVDTAVRTSDAGY 205