BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041718
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-16
gb|AAS79604.1| putative pentatricopeptide repeat-containing prot...    82   5e-14
ref|XP_003603974.1| Pentatricopeptide repeat-containing protein ...    77   1e-12

>ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera] gi|297744424|emb|CBI37686.3| unnamed
           protein product [Vitis vinifera]
          Length = 571

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 7/77 (9%)
 Frame = -1

Query: 214 NNMEKRFGIRPTIQHYGCMVDLLARVGHLKEAELFVKRMPIEP-------LIWACKMHGD 56
           N+M  ++GI+PTIQHYGCMVDLLAR GHL EAE F+++MPIEP       LIWA K+HGD
Sbjct: 322 NSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGD 381

Query: 55  HDRGDGLMNQNQLLQMD 5
            DR + LM    LL+MD
Sbjct: 382 IDRSEQLMKDRGLLKMD 398


>ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 7/76 (9%)
 Frame = -1

Query: 214 NNMEKRFGIRPTIQHYGCMVDLLARVGHLKEAELFVKRMPIEP-------LIWACKMHGD 56
           +++++R+G++P+IQH+GC+VDLLAR G LKEAE FV  MPIEP       LIWACK+HGD
Sbjct: 293 SDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGD 352

Query: 55  HDRGDGLMNQNQLLQM 8
            DR + LM   ++  M
Sbjct: 353 DDRAERLMKHLEIQDM 368


>ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 7/76 (9%)
 Frame = -1

Query: 214 NNMEKRFGIRPTIQHYGCMVDLLARVGHLKEAELFVKRMPIEP-------LIWACKMHGD 56
           +++++R+G++P+IQH+GC+VDLLAR G LKEAE FV  MPIEP       LIWACK+HGD
Sbjct: 323 SDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGD 382

Query: 55  HDRGDGLMNQNQLLQM 8
            DR + LM   ++  M
Sbjct: 383 ADRAERLMKHLEIQDM 398


>gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida] gi|118562903|dbj|BAF37793.1| hypothetical
           protein [Ipomoea trifida]
          Length = 575

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 7/73 (9%)
 Frame = -1

Query: 202 KRFGIRPTIQHYGCMVDLLARVGHLKEAELFVKRMPIEP-------LIWACKMHGDHDRG 44
           K+  I+PTIQHYGC+VD+L R G LK+AE F+++MPIEP       LIW CK+ GD +R 
Sbjct: 330 KKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERS 389

Query: 43  DGLMNQNQLLQMD 5
           + L+ + +LL MD
Sbjct: 390 ERLVRELELLNMD 402


>ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355493022|gb|AES74225.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 566

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 7/76 (9%)
 Frame = -1

Query: 214 NNMEKRFGIRPTIQHYGCMVDLLARVGHLKEAELFVKRMPIEP-------LIWACKMHGD 56
           N+++KR+ ++P I+H+GCMVDLLA+ G L+EAE F+  MP++P       LIWACK+H D
Sbjct: 317 NDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHAD 376

Query: 55  HDRGDGLMNQNQLLQM 8
            +R + LM   +L  M
Sbjct: 377 TERAERLMKHLELQGM 392