BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041685
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11
ref|XP_002306667.1| predicted protein [Populus trichocarpa] gi|2...    73   2e-11
ref|XP_003522561.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08
ref|XP_003602633.1| Pentatricopeptide repeat-containing protein ...    61   8e-08
sp|Q9LP03.1|PPR73_ARATH RecName: Full=Pentatricopeptide repeat-c...    60   1e-07

>ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = -3

Query: 209 ITCYSKLLENSIASKSLDLGNLIHAQLIKTGLTDHTFLGNRLLEVYSKFGVLNESLQVFY 30
           ++ YS L+E+    KSLD    +HAQLIK G   HTFLGNR L++YS+ G  N+SL+VF 
Sbjct: 37  LSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFE 96

Query: 29  EIPNKNLFT 3
           +I +KNL +
Sbjct: 97  DIIDKNLIS 105


>ref|XP_002306667.1| predicted protein [Populus trichocarpa] gi|222856116|gb|EEE93663.1|
           predicted protein [Populus trichocarpa]
          Length = 630

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/71 (47%), Positives = 51/71 (71%)
 Frame = -3

Query: 221 SSNIITCYSKLLENSIASKSLDLGNLIHAQLIKTGLTDHTFLGNRLLEVYSKFGVLNESL 42
           S   ++ YS L+++  + KSL    + HAQLIK GL  HTFLGNR L++YS+FG +N++L
Sbjct: 12  SRTSLSYYSYLIDHCFSLKSLSFARITHAQLIKVGLNRHTFLGNRCLDLYSQFGNVNDAL 71

Query: 41  QVFYEIPNKNL 9
           +VF +I +KN+
Sbjct: 72  KVFDDISSKNI 82


>ref|XP_003522561.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Glycine max]
          Length = 630

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/62 (45%), Positives = 45/62 (72%)
 Frame = -3

Query: 197 SKLLENSIASKSLDLGNLIHAQLIKTGLTDHTFLGNRLLEVYSKFGVLNESLQVFYEIPN 18
           S LL + ++ KSL+   ++HA  +K GL  +T+LGNR L++YS+FG LN++ +VF +I +
Sbjct: 19  SLLLNHCLSKKSLNFVKIVHAHFLKLGLNTYTYLGNRCLDLYSEFGHLNDAPKVFDDISH 78

Query: 17  KN 12
           KN
Sbjct: 79  KN 80


>ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491681|gb|AES72884.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 39/112 (34%), Positives = 58/112 (51%)
 Frame = -3

Query: 338 KKCVISSPMIVYSNPLKQFIPYLQFFKRYLFTKPISPKDSSNIITCYSKLLENSIASKSL 159
           + C +  P  +  +PL +  P L F      T      D S+ I  +S L+ N +++KSL
Sbjct: 39  ESCPVKKPRQL--DPLTK--PVLFFLVGERNTVMFHTNDFSSTIEKFSSLISNCVSAKSL 94

Query: 158 DLGNLIHAQLIKTGLTDHTFLGNRLLEVYSKFGVLNESLQVFYEIPNKNLFT 3
             G  +H+QLIKT L   TFL N L+++YSK G      + F ++PNK   T
Sbjct: 95  KHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRT 146


>sp|Q9LP03.1|PPR73_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g43980, mitochondrial; Flags: Precursor
           gi|8778677|gb|AAF79685.1|AC022314_26 F9C16.15
           [Arabidopsis thaliana]
          Length = 633

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 44/66 (66%)
 Frame = -3

Query: 200 YSKLLENSIASKSLDLGNLIHAQLIKTGLTDHTFLGNRLLEVYSKFGVLNESLQVFYEIP 21
           +S+L+  S+ SKS  L  ++HAQL++ G    T+ GNR L++Y K G +  +LQ+F +IP
Sbjct: 19  FSRLVNRSLLSKSPTLAKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQLFDDIP 78

Query: 20  NKNLFT 3
           +KN  T
Sbjct: 79  DKNTIT 84