BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041655
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002339136.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14
ref|XP_003606014.1| Cytochrome b6/f complex subunit V, partial [...    72   6e-11
ref|YP_003433995.1| photosystem I subunit IX [Typha latifolia] g...    70   1e-10
ref|YP_007476067.1| photosystem I subunit IX [Dasypogon bromelii...    70   1e-10
ref|XP_003605594.1| ATP synthase subunit a chloroplastic [Medica...    70   1e-10

>ref|XP_002339136.1| predicted protein [Populus trichocarpa] gi|222874471|gb|EEF11602.1|
           predicted protein [Populus trichocarpa]
          Length = 79

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 44/61 (72%), Positives = 49/61 (80%), Gaps = 7/61 (11%)
 Frame = +3

Query: 126 SLTTYVSDHI-----CITIK--KGGFSMRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLF 284
           +LTTY+   I     CITIK  +GGF MRD+KTYLSVAPV+STLWFGSLAGLLIEINR F
Sbjct: 6   NLTTYIHLIIYVLPLCITIKNTEGGFFMRDLKTYLSVAPVISTLWFGSLAGLLIEINRFF 65

Query: 285 P 287
           P
Sbjct: 66  P 66


>ref|XP_003606014.1| Cytochrome b6/f complex subunit V, partial [Medicago truncatula]
           gi|355507069|gb|AES88211.1| Cytochrome b6/f complex
           subunit V, partial [Medicago truncatula]
          Length = 128

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +3

Query: 168 KKGGFSMRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 287
           ++GGF MRD+KTYLSVAPV STLWF  LAGLLIEINRLFP
Sbjct: 85  RRGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINRLFP 124


>ref|YP_003433995.1| photosystem I subunit IX [Typha latifolia]
           gi|377819398|ref|YP_005097894.1| PSI reaction center
           subunit IX (chloroplast) [Colocasia esculenta]
           gi|456061471|ref|YP_007475639.1| photosystem I subunit
           IX [Heliconia collinsiana]
           gi|456061576|ref|YP_007475724.1| photosystem I subunit
           IX [Zingiber spectabile] gi|69217664|gb|AAZ04097.1|
           photosystem I subunit IX [Typha latifolia]
           gi|156598374|gb|ABU85447.1| photosystem I subunit IX
           [Musa acuminata] gi|218175494|gb|ACK75694.1| PsaJ [Typha
           domingensis] gi|281371792|gb|ADA63719.1| photosystem I
           subunit IX [Typha latifolia] gi|340536659|gb|AEK48426.1|
           PSI reaction center subunit IX (chloroplast) [Colocasia
           esculenta] gi|340536746|gb|AEK48512.1| PSI reaction
           center subunit IX (chloroplast) [Colocasia esculenta]
           gi|374974454|gb|AFA27322.1| photosystem I subunit IX,
           partial [Renealmia alpinia] gi|449326118|gb|AGE92704.1|
           photosystem I subunit IX [Heliconia collinsiana]
           gi|449326204|gb|AGE92789.1| photosystem I subunit IX
           [Zingiber spectabile] gi|449326812|gb|AGE93390.1|
           photosystem I subunit IX [Alpinia zerumbet]
          Length = 42

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +3

Query: 186 MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 287
           MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP
Sbjct: 1   MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 34


>ref|YP_007476067.1| photosystem I subunit IX [Dasypogon bromeliifolius]
           gi|374974407|gb|AFA27299.1| photosystem I subunit IX
           [Dasypogon bromeliifolius] gi|374974429|gb|AFA27310.1|
           photosystem I subunit IX, partial [Kingia australis]
           gi|374974464|gb|AFA27327.1| photosystem I subunit IX,
           partial [Thurnia sphaerocephala]
           gi|392841358|gb|AFM83313.1| photosystem I subunit IX
           (chloroplast) [Kingia australis]
           gi|449326551|gb|AGE93132.1| photosystem I subunit IX
           [Dasypogon bromeliifolius] gi|449326638|gb|AGE93218.1|
           photosystem I subunit IX [Calectasia narragara]
           gi|449326899|gb|AGE93476.1| photosystem I subunit IX
           [Xiphidium caeruleum]
          Length = 44

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +3

Query: 186 MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 287
           MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP
Sbjct: 1   MRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 34


>ref|XP_003605594.1| ATP synthase subunit a chloroplastic [Medicago truncatula]
           gi|355506649|gb|AES87791.1| ATP synthase subunit a
           chloroplastic [Medicago truncatula]
          Length = 467

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +3

Query: 171 KGGFSMRDIKTYLSVAPVLSTLWFGSLAGLLIEINRLFP 287
           +GGF MRD+KTYLSVAPV STLWF  LAGLLIEINRLFP
Sbjct: 266 EGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINRLFP 304