BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041642
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...    77   2e-12
emb|CBI21441.3| unnamed protein product [Vitis vinifera]               71   8e-11
ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containi...    69   3e-10

>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/72 (52%), Positives = 46/72 (63%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           AC Q      G  VH D V FG  +  QVRNS++DMYSKC D+  +R+VFD M  RD+ S
Sbjct: 112 ACAQLSRFGSGRGVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFS 171

Query: 183 WNSMIYGMVSNG 218
           WNSM+ G V NG
Sbjct: 172 WNSMMSGYVWNG 183


>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 43/72 (59%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           AC Q L L+ GI+VH D V  G     QV NSLIDMYSK  D+   RRVFD M  RD+LS
Sbjct: 133 ACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLS 192

Query: 183 WNSMIYGMVSNG 218
           WNSMI G V NG
Sbjct: 193 WNSMISGYVCNG 204


>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/72 (54%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           ACTQ L  + GI +H D +  G  +  QV NSLIDMY KC + + +R VF+ M  RDL S
Sbjct: 105 ACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFS 164

Query: 183 WNSMIYGMVSNG 218
           WNSMI G VSNG
Sbjct: 165 WNSMISGYVSNG 176


>emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 40/67 (59%), Positives = 44/67 (65%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           AC Q L L+ GI+VH D V  G     QV NSLIDMYSK  D+   RRVFD M  RD+LS
Sbjct: 472 ACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLS 531

Query: 183 WNSMIYG 203
           WNSMI G
Sbjct: 532 WNSMISG 538


>ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/72 (44%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           AC Q   L+ G  VH+   +   G+   + NSLIDM+SKC DI  ++R+FD M ++DL+S
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS 350

Query: 183 WNSMIYGMVSNG 218
           WNSM+ G+  +G
Sbjct: 351 WNSMVNGLALHG 362



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 46/71 (64%)
 Frame = +3

Query: 3   ACTQALSLKDGIRVHNDAVQFGGGNISQVRNSLIDMYSKCEDIKMSRRVFDGMRHRDLLS 182
           AC +   L  G+++H+   +      + + ++L++MY+KC D+K +R+VFD +  +D+ +
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYA 248

Query: 183 WNSMIYGMVSN 215
           W+++I+G V N
Sbjct: 249 WSALIFGYVKN 259