BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041613
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi...   169   2e-40
ref|NP_177599.1| pentatricopeptide repeat-containing protein [Ar...   166   2e-39
ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arab...   164   5e-39
gb|AFP20310.1| At1g74600-like protein, partial [Capsella grandif...   144   1e-32
gb|AEK83197.1| At1g74600-like protein [Capsella grandiflora] gi|...   144   1e-32

>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
            chloroplastic [Vitis vinifera]
            gi|297733984|emb|CBI15231.3| unnamed protein product
            [Vitis vinifera]
          Length = 893

 Score =  169 bits (429), Expect = 2e-40
 Identities = 79/107 (73%), Positives = 93/107 (86%)
 Frame = +2

Query: 2    PGSRHYACMVDILGRSGRLEEAASFIAHMPIEPDALVWGALLASCKVHGDVELGRLAAKR 181
            PG  HYACMVD+LGRSGRL+EA  FI +MPIEPDAL+WG LLA+CKVHGD+ELGRLAAKR
Sbjct: 785  PGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKR 844

Query: 182  VFELESTGAGAYISLSNILADVGQWDEVINIRSLMKGVGVQKEPGWS 322
            V ELE   AGAY++LSNI AD+G W++V+ IRSLM+G GV+KEPGWS
Sbjct: 845  VIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891


>ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g74600, chloroplastic; Flags: Precursor
            gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical
            protein; 84160-81473 [Arabidopsis thaliana]
            gi|332197493|gb|AEE35614.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  166 bits (419), Expect = 2e-39
 Identities = 78/107 (72%), Positives = 90/107 (84%)
 Frame = +2

Query: 2    PGSRHYACMVDILGRSGRLEEAASFIAHMPIEPDALVWGALLASCKVHGDVELGRLAAKR 181
            P +RHY CMVD LGRSGRL EA SFI +M I+PDALVWG LLA+CK+HG+VELG++AAK+
Sbjct: 787  PENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKK 846

Query: 182  VFELESTGAGAYISLSNILADVGQWDEVINIRSLMKGVGVQKEPGWS 322
              ELE + AGAYISLSNILA+VG+WDEV   R LMKG GVQKEPGWS
Sbjct: 847  AIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWS 893


>ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata] gi|297334827|gb|EFH65245.1| hypothetical protein
           ARALYDRAFT_476599 [Arabidopsis lyrata subsp. lyrata]
          Length = 717

 Score =  164 bits (416), Expect = 5e-39
 Identities = 77/107 (71%), Positives = 89/107 (83%)
 Frame = +2

Query: 2   PGSRHYACMVDILGRSGRLEEAASFIAHMPIEPDALVWGALLASCKVHGDVELGRLAAKR 181
           P +RHY CMVD LGRSGRL EA +FI   PI+PDALVWG LLA+CK++GDVELG+LAAK+
Sbjct: 609 PENRHYVCMVDALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKK 668

Query: 182 VFELESTGAGAYISLSNILADVGQWDEVINIRSLMKGVGVQKEPGWS 322
             ELE + AGAY+SLSNILA+VG+WDEV   R LMKG GVQKEPGWS
Sbjct: 669 AIELEPSDAGAYVSLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWS 715


>gb|AFP20310.1| At1g74600-like protein, partial [Capsella grandiflora]
          Length = 204

 Score =  144 bits (362), Expect = 1e-32
 Identities = 69/97 (71%), Positives = 79/97 (81%)
 Frame = +2

Query: 2   PGSRHYACMVDILGRSGRLEEAASFIAHMPIEPDALVWGALLASCKVHGDVELGRLAAKR 181
           P +RHY CMVD LGRSGRL EA SFI  MPI+PDALVWG LL++C++HGDVELG+LAAK 
Sbjct: 108 PENRHYVCMVDTLGRSGRLREAESFINSMPIKPDALVWGTLLSACRLHGDVELGKLAAKM 167

Query: 182 VFELESTGAGAYISLSNILADVGQWDEVINIRSLMKG 292
             ELE + AGAYISLSNILA+VG+WD V   R LMKG
Sbjct: 168 AIELEPSDAGAYISLSNILAEVGEWDVVEETRKLMKG 204


>gb|AEK83197.1| At1g74600-like protein [Capsella grandiflora]
           gi|341606191|gb|AEK83198.1| At1g74600-like protein
           [Capsella grandiflora] gi|341606193|gb|AEK83199.1|
           At1g74600-like protein [Capsella grandiflora]
           gi|341606195|gb|AEK83200.1| At1g74600-like protein
           [Capsella grandiflora] gi|341606197|gb|AEK83201.1|
           At1g74600-like protein [Capsella grandiflora]
           gi|341606199|gb|AEK83202.1| At1g74600-like protein
           [Capsella grandiflora]
          Length = 204

 Score =  144 bits (362), Expect = 1e-32
 Identities = 69/97 (71%), Positives = 79/97 (81%)
 Frame = +2

Query: 2   PGSRHYACMVDILGRSGRLEEAASFIAHMPIEPDALVWGALLASCKVHGDVELGRLAAKR 181
           P +RHY CMVD LGRSGRL EA SFI  MPI+PDALVWG LL++C++HGDVELG+LAAK 
Sbjct: 108 PENRHYVCMVDTLGRSGRLREAESFINSMPIKPDALVWGTLLSACRLHGDVELGKLAAKM 167

Query: 182 VFELESTGAGAYISLSNILADVGQWDEVINIRSLMKG 292
             ELE + AGAYISLSNILA+VG+WD V   R LMKG
Sbjct: 168 AIELEPSDAGAYISLSNILAEVGEWDVVEETRKLMKG 204