BLASTX nr result
ID: Coptis23_contig00041578
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00041578
(274 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|2... 119 3e-25
ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi... 115 3e-24
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,... 112 2e-23
ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containi... 100 9e-20
ref|NP_172763.1| pentatricopeptide repeat-containing protein [Ar... 98 6e-19
>ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|222852487|gb|EEE90034.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 119 bits (298), Expect = 3e-25
Identities = 51/90 (56%), Positives = 69/90 (76%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D VT+T+LI F EG +D+A+ L D M M L+PDR+ YTT++DH CK+G++E+A + F
Sbjct: 359 DVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIF 418
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
DM+EKGI PDVV+YN+LINGFCK+ V E
Sbjct: 419 CDMVEKGITPDVVSYNALINGFCKSLRVGE 448
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/89 (34%), Positives = 49/89 (55%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D + + +N F E R + A ++F +M+ PD V +T ++D LCK + + A F+
Sbjct: 113 DIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFW 172
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVD 6
L+M++KGI PD A +L G C VD
Sbjct: 173 LNMLDKGIRPDNKACVALAVGLCDGGQVD 201
>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product
[Vitis vinifera]
Length = 519
Score = 115 bits (289), Expect = 3e-24
Identities = 51/90 (56%), Positives = 69/90 (76%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D VT+T+LI F EG +++A+ L DQM + L+PDRV+YTT+VDHLCKTG++ +A + F
Sbjct: 358 DVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVF 417
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
DM+E GI PDVV+YN+LING C+A V E
Sbjct: 418 CDMVESGITPDVVSYNALINGLCRASRVSE 447
Score = 59.3 bits (142), Expect = 3e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D VTYT++IN GR D A +++ M+ PD +V LC G+++LA
Sbjct: 148 DIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELT 207
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
+ + I YNSLINGFC+A +D+
Sbjct: 208 VGAMRGRIKFSKSIYNSLINGFCQAGWIDK 237
Score = 57.8 bits (138), Expect = 9e-07
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = -3
Query: 260 YTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFFLDMI 81
Y LIN F G D A+ + M PD V Y ++++ C +E A N M
Sbjct: 222 YNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKME 281
Query: 80 EKGIAPDVVAYNSLINGFCKAFMVDE 3
G+ PDV +YN L+ G CKA +D+
Sbjct: 282 RSGVEPDVYSYNELLKGLCKANRLDK 307
Score = 55.8 bits (133), Expect = 3e-06
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D Y + +N E + D+A + M+ PD V YT +++ LC+ GR + A +
Sbjct: 113 DIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIW 172
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVD 6
+M+ KG +PD A +L+ G C VD
Sbjct: 173 RNMVRKGFSPDEKACRALVLGLCHDGKVD 201
>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 554
Score = 112 bits (281), Expect = 2e-23
Identities = 47/90 (52%), Positives = 68/90 (75%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D VT+T+ I F G+G ++A+ L DQM M L PD + YTT++DHLCK+G++E+A + F
Sbjct: 359 DVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIF 418
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
DM+E+GI+PDV+++N+LINGFCK V E
Sbjct: 419 CDMVEQGISPDVISFNALINGFCKCSRVSE 448
Score = 63.2 bits (152), Expect = 2e-08
Identities = 30/89 (33%), Positives = 50/89 (56%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D + + ++ F EGR DLA ++F++++ PD V YT ++ +CK + + A F+
Sbjct: 113 DIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFW 172
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVD 6
DMI KG +PD A +++ G C VD
Sbjct: 173 RDMIHKGFSPDNKACGAIVVGLCDGRKVD 201
>ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 100 bits (250), Expect = 9e-20
Identities = 41/88 (46%), Positives = 62/88 (70%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D VT+ +LI+ F EG + + L D+M M ++PD + YT +VDHLCK G++++A + F
Sbjct: 363 DMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVF 422
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMV 9
DM+E G+ PDV++YN+L+NGFCK V
Sbjct: 423 RDMVENGVNPDVISYNALLNGFCKTSRV 450
Score = 63.5 bits (153), Expect = 2e-08
Identities = 31/89 (34%), Positives = 48/89 (53%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
+++ Y LI+ F GR D A + M +PD V Y ++++ C+ G ++ A
Sbjct: 223 NSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLV 282
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVD 6
M G+ PD+ +YN L+ GFCKA MVD
Sbjct: 283 ETMERSGVEPDLYSYNELLKGFCKANMVD 311
Score = 60.1 bits (144), Expect = 2e-07
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D V+YT++I+ R D A ++ +++ L PD +V LC GR++LA
Sbjct: 153 DVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELV 212
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
+ +I+ G+ + + YN+LI+GFC+ VD+
Sbjct: 213 VGVIKGGVKVNSLVYNALIDGFCRMGRVDK 242
>ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis
thaliana] gi|332190841|gb|AEE28962.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 98.2 bits (243), Expect = 6e-19
Identities = 45/90 (50%), Positives = 61/90 (67%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
+ VTYT LI F EG + +A+ L DQM + L PDR+ YTT++DHLCK+G ++ A F
Sbjct: 359 NVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVF 418
Query: 92 LDMIEKGIAPDVVAYNSLINGFCKAFMVDE 3
DMIE I PD ++YNSLI+G C++ V E
Sbjct: 419 NDMIEHEITPDAISYNSLISGLCRSGRVTE 448
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = -3
Query: 272 DTVTYTVLINTFFGEGRADLAEDLFDQMLSMNLIPDRVVYTTMVDHLCKTGRIELARNFF 93
D V+YT+LIN F G+ A ++++ M+ + PD +V LC +++LA
Sbjct: 148 DVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMV 207
Query: 92 LDMIEKG-IAPDVVAYNSLINGFCKAFMVDE 3
+ I+ + V YN+LI+GFCKA +++
Sbjct: 208 AEEIKSARVKLSTVVYNALISGFCKAGRIEK 238