BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041536
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   124   1e-26
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   122   3e-26
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   117   1e-24
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   107   1e-21
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   107   1e-21

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/131 (43%), Positives = 85/131 (64%)
 Frame = +2

Query: 8   EGFLPEKYLGFTLHHGKVTRACVMPVLAKIKKRLTSWKGKRLSFQGRITLIKSVLCSIPV 187
           +G  P  YLG  +  GK     + P++ KIK +L++WK   LS  GR+ LIKSV  S+ +
Sbjct: 395 KGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLI 454

Query: 188 YNMSIYKWPMSVIKEAETTMKNFLWSGDPNTRKGVTVSWDRVCKPPFEGGLGIRRLTHMN 367
           + ++IY WP  ++KE ET  +NF+WSGD   RK VTV+W ++CKP  +GGLGIR L+ +N
Sbjct: 455 HTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQLN 514

Query: 368 STVLM*LAWEV 400
           +   + L W++
Sbjct: 515 AAGNLKLCWDM 525


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/138 (42%), Positives = 82/138 (59%)
 Frame = +2

Query: 11  GFLPEKYLGFTLHHGKVTRACVMPVLAKIKKRLTSWKGKRLSFQGRITLIKSVLCSIPVY 190
           G LP  YLG  +  GK       P+  K+K +L  WK   LS  GRI L+KSV+ S+ V+
Sbjct: 490 GSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVH 549

Query: 191 NMSIYKWPMSVIKEAETTMKNFLWSGDPNTRKGVTVSWDRVCKPPFEGGLGIRRLTHMNS 370
            MSIY WP+ ++KE E  +KNF+WSGD   RK VTV+W ++C    EGGLG++ L  +N 
Sbjct: 550 TMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNE 609

Query: 371 TVLM*LAWEVKQGERDFA 424
              + + W + Q +  +A
Sbjct: 610 ATNLKICWNLMQSDEQWA 627


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  117 bits (293), Expect = 1e-24
 Identities = 53/130 (40%), Positives = 85/130 (65%)
 Frame = +2

Query: 11  GFLPEKYLGFTLHHGKVTRACVMPVLAKIKKRLTSWKGKRLSFQGRITLIKSVLCSIPVY 190
           G LP  YLG  +  GK     + P++ KI  +L++WK   LS  GR+ ++KSV+ S+  +
Sbjct: 31  GTLPFTYLGVPIFKGKPKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTH 90

Query: 191 NMSIYKWPMSVIKEAETTMKNFLWSGDPNTRKGVTVSWDRVCKPPFEGGLGIRRLTHMNS 370
           ++++Y WP S++K+ E ++KNF+WSGD + RK VTV+W ++C+P  +GGL IR L  +NS
Sbjct: 91  SITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLIQLNS 150

Query: 371 TVLM*LAWEV 400
              + L W +
Sbjct: 151 ASNLKLCWNI 160


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  107 bits (267), Expect = 1e-21
 Identities = 53/130 (40%), Positives = 78/130 (60%)
 Frame = +2

Query: 11   GFLPEKYLGFTLHHGKVTRACVMPVLAKIKKRLTSWKGKRLSFQGRITLIKSVLCSIPVY 190
            G LP KYLG  L   ++T++  +P++ KI+ R+TSW  + LSF GR+ LIKSVL SI  +
Sbjct: 912  GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNF 971

Query: 191  NMSIYKWPMSVIKEAETTMKNFLWSGDPNTRKGVTVSWDRVCKPPFEGGLGIRRLTHMNS 370
             +S+++ P + ++E E     FLWSG     K   ++W  VCK   EGGLG++ L   N 
Sbjct: 972  WLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANE 1031

Query: 371  TVLM*LAWEV 400
              L+ L W +
Sbjct: 1032 VSLLKLIWRI 1041


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  107 bits (266), Expect = 1e-21
 Identities = 58/148 (39%), Positives = 84/148 (56%)
 Frame = +2

Query: 11  GFLPEKYLGFTLHHGKVTRACVMPVLAKIKKRLTSWKGKRLSFQGRITLIKSVLCSIPVY 190
           G LP +YLG  L   ++T+  + P+  +I+ R+ +W  + LSF GR+ LI SVL S   +
Sbjct: 170 GQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNF 229

Query: 191 NMSIYKWPMSVIKEAETTMKNFLWSGDPNTRKGVTVSWDRVCKPPFEGGLGIRRLTHMNS 370
            MS ++ P + +KE  +    FLWSG    R+   VSWD +CKP  EGGLG+R LT  N 
Sbjct: 230 WMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANV 289

Query: 371 TVLM*LAWEVKQGERDFALFMKAKYFNL 454
             ++ L W V     D +L++K    NL
Sbjct: 290 VSVLKLIWRVT--SNDDSLWVKWSKMNL 315