BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041532
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521555.1| pentatricopeptide repeat-containing protein,...    94   2e-17
ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17
ref|NP_201451.1| pentatricopeptide repeat-containing protein [Ar...    85   5e-15
gb|ABB45856.1| hypothetical protein [Eutrema halophilum]               84   2e-14
ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containi...    83   2e-14

>ref|XP_002521555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539233|gb|EEF40826.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 418

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 46/87 (52%), Positives = 60/87 (68%)
 Frame = -3

Query: 262 DTTAVWGLFIQMHRTRTDLDAHTFTPVIAACSSFSNNLRGKQVHALFIKYCSKLETVANT 83
           D  A W LF +MH    DLDA+TFTPV++ACS+     RGKQVHAL IK  + L  +A T
Sbjct: 58  DFLATWALFYRMHCACLDLDAYTFTPVLSACSALPGAERGKQVHALMIKAGTDLGPIAKT 117

Query: 82  ALLDMYFKCDCVNDSVEVFEEMKYKDV 2
           AL+DMY K   + DSV+ FEE++++DV
Sbjct: 118 ALIDMYSKYGYLGDSVKAFEEVEFRDV 144


>ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 43/84 (51%), Positives = 60/84 (71%)
 Frame = -3

Query: 253 AVWGLFIQMHRTRTDLDAHTFTPVIAACSSFSNNLRGKQVHALFIKYCSKLETVANTALL 74
           A W LF ++H    DLDA+TFTPV+ ACS+  +   G+QVHAL IK  + L T+  TA++
Sbjct: 75  ATWDLFSRIHSAFLDLDAYTFTPVLRACSALPDTKCGRQVHALMIKTGTDLGTITKTAVM 134

Query: 73  DMYFKCDCVNDSVEVFEEMKYKDV 2
           DMY K  C+ +SV+VFEEM+++DV
Sbjct: 135 DMYSKYGCLGESVKVFEEMEFRDV 158


>ref|NP_201451.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171135|sp|Q9FJY9.1|PP448_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g66500, mitochondrial; Flags: Precursor
           gi|10177531|dbj|BAB10926.1| unnamed protein product
           [Arabidopsis thaliana] gi|332010838|gb|AED98221.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 532

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 45/88 (51%), Positives = 59/88 (67%)
 Frame = -3

Query: 265 NDTTAVWGLFIQMHRTRTDLDAHTFTPVIAACSSFSNNLRGKQVHALFIKYCSKLETVAN 86
           NDT A   LF+Q+HR   DL +HTFTPV+ ACS  S    G+QVHAL IK  ++  T++ 
Sbjct: 66  NDTLA---LFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISK 122

Query: 85  TALLDMYFKCDCVNDSVEVFEEMKYKDV 2
           TAL+DMY K   + DSV VFE ++ KD+
Sbjct: 123 TALIDMYSKYGHLVDSVRVFESVEEKDL 150


>gb|ABB45856.1| hypothetical protein [Eutrema halophilum]
          Length = 527

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 41/80 (51%), Positives = 56/80 (70%)
 Frame = -3

Query: 241 LFIQMHRTRTDLDAHTFTPVIAACSSFSNNLRGKQVHALFIKYCSKLETVANTALLDMYF 62
           LF++MHR   DL +HTFTPV+ AC+  S+   G+QVHAL IK  ++  T++ TAL+DMY 
Sbjct: 66  LFLKMHRASPDLSSHTFTPVLGACALLSSPKTGRQVHALMIKQGAETGTISKTALIDMYS 125

Query: 61  KCDCVNDSVEVFEEMKYKDV 2
           K   + DSV VFE ++ KDV
Sbjct: 126 KYGHLVDSVTVFESVEDKDV 145


>ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
           gi|449529896|ref|XP_004171934.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
          Length = 544

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = -3

Query: 247 WGLFIQMHRTRTDLDAHTFTPVIAACSSFSNNLRGKQVHALFIKYCSKLETVANTALLDM 68
           W LF +MHR+ + L AHT T V+AACS+   +  G+ VH L IK  +    V  TA+LDM
Sbjct: 77  WSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDM 136

Query: 67  YFKCDCVNDSVEVFEEMKYKDV 2
           Y KC  ++DSV+VFEEM+ +DV
Sbjct: 137 YSKCGLLDDSVKVFEEMEMRDV 158