BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041527
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containi...   120   9e-26
emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]   103   1e-20
ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containi...    98   6e-19
ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14

>ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  120 bits (302), Expect = 9e-26
 Identities = 65/112 (58%), Positives = 85/112 (75%), Gaps = 1/112 (0%)
 Frame = +2

Query: 134 VSNFRALQQNLFSLLDNCKTRKELFQIHAQIIVNDLCQKNYILAKLLSFCIVSGDLEHAI 313
           ++  RALQQ+ FSLL  C T K+L QIH QIIVN   QKN++L KLLSF I SG+L +A 
Sbjct: 11  LTGLRALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAH 70

Query: 314 QAFKQIEKPSTIVWNQIIRGYARSETPIKSIELFNQLGGVE-EAEFDGFTYS 466
           + F++IE PST VWNQ+IRG+++SETP K +EL+N++  VE EAE + FTYS
Sbjct: 71  KVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRM--VEAEAEPNEFTYS 120


>emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  103 bits (258), Expect = 1e-20
 Identities = 56/95 (58%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
 Frame = +2

Query: 185 CKTRKELFQIHAQIIVNDLCQKNYILAKLLSFCIVSGDLEHAIQAFKQIEKPSTIVWNQI 364
           C T K+L QIH QIIVN   QKN++L KLLSF I SG+L +A + F++IE PST VWNQ+
Sbjct: 44  CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQM 103

Query: 365 IRGYARSETPIKSIELFNQLGGVE-EAEFDGFTYS 466
           IRG+++SETP K +EL+N++  VE EAE + FTYS
Sbjct: 104 IRGHSQSETPHKLVELYNRM--VEAEAEPNEFTYS 136


>ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
 Frame = +2

Query: 146 RALQQNLFSLLDNCKTRKELFQIHAQIIVNDLCQKNYILAKLLSFCIVSGDLEHAIQAFK 325
           R  QQ +FS+L +C + + L +IHAQI+V+   QKNYIL  LLS  I  G L  A + F+
Sbjct: 24  RVRQQFIFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFE 83

Query: 326 QIEKPSTIVWNQIIRGYARSETPIKSIELFNQ--LGGVEEAEFDGFTYS 466
            I  PST VWNQII+G+ RS+T  KSIELF +  L GVE    +GFTYS
Sbjct: 84  DITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA---NGFTYS 129


>ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
 Frame = +2

Query: 146 RALQQNLFSLLDNCKTRKELFQIHAQIIVNDLCQKNYILAKLLSFCIVSGDLEHAIQAFK 325
           R  QQ +FS+L +C + + L + HAQI+V+   QKNYIL  LLS  I  G L  A + F+
Sbjct: 24  RVRQQFIFSVLKSCVSFRNLAKTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFE 83

Query: 326 QIEKPSTIVWNQIIRGYARSETPIKSIELFNQ--LGGVEEAEFDGFTYS 466
            I  PST VWNQII+G+ RS+T  KSIELF +  L GVE    +GFTYS
Sbjct: 84  DITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA---NGFTYS 129


>ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 40/89 (44%), Positives = 56/89 (62%)
 Frame = +2

Query: 158 QNLFSLLDNCKTRKELFQIHAQIIVNDLCQKNYILAKLLSFCIVSGDLEHAIQAFKQIEK 337
           Q L  LLD C + K L  +HAQII++ L  +   L KLLS C+  GDL +A   F QI +
Sbjct: 40  QTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQ 99

Query: 338 PSTIVWNQIIRGYARSETPIKSIELFNQL 424
           P+  ++N +IRGY+ S  P+KS+ LF Q+
Sbjct: 100 PNKFMYNHLIRGYSNSNDPMKSLLLFRQM 128