BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041518
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   1e-07

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
 Frame = -2

Query: 350 YLRSLGLCTQIIHNNNDNRVPNLWLLWKNDMMAPTMHSQSSQHLIVESPNRLITI----I 183
           Y  S+G+    + N  +   PNLW LW  ++ A  M   S Q + +E      T+    +
Sbjct: 48  YWDSIGVSKYCV-NGREILQPNLWALWGREVSAIVMFI-SDQCIALEISCHQSTVYVAAV 105

Query: 182 HASSIYVRRRQLWADM-NSTNA*SKAWLILGDFNAYLSPTGKKRGRTPLSAAMAEF 18
           +AS+ Y++RRQLWA++ N        WL +GDFNA L    K+R R P   +  +F
Sbjct: 106 YASTFYLKRRQLWAELTNLQGCFQGPWLFIGDFNAVLGAHEKRRRRPPPPLSCIDF 161