BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041485
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   115   5e-24
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arab...   111   5e-23
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   110   2e-22
dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]    110   2e-22

>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  115 bits (287), Expect = 5e-24
 Identities = 54/87 (62%), Positives = 67/87 (77%)
 Frame = -3

Query: 263 SVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKME 84
           S++SGFCK+GKPELA+GF++N  K G L+ PN+VTYTA+VS+LC  GR  EV +LV +ME
Sbjct: 189 SIVSGFCKMGKPELAMGFFENSLKLGALK-PNLVTYTAVVSSLCMLGRADEVFDLVCEME 247

Query: 83  NEGVVLDAVFYSSWICGYFEKGVLDEA 3
            EG+  D VFYS WICGYF  GV  EA
Sbjct: 248 EEGLAFDVVFYSCWICGYFRNGVFIEA 274



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/86 (36%), Positives = 49/86 (56%)
 Frame = -3

Query: 260 VISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMEN 81
           +I GF K G  E ++GF  ++  +G    PN+VTYTAI+   C++G++ E   +   +EN
Sbjct: 296 LIDGFSKEGSVEKSVGFLHHMLANGSE--PNLVTYTAIILGFCRKGKIDEAFAIFKLVEN 353

Query: 80  EGVVLDAVFYSSWICGYFEKGVLDEA 3
            G+ LD   Y+  + G+  KG  D A
Sbjct: 354 LGIKLDEFIYAILVDGFCLKGDFDRA 379


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  114 bits (284), Expect = 1e-23
 Identities = 59/86 (68%), Positives = 65/86 (75%)
 Frame = -3

Query: 263 SVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKME 84
           SVISGFC+IGKPELALGF+ NV   G LR PNVVT TA+V ALCK GRV EVC LV  ME
Sbjct: 164 SVISGFCRIGKPELALGFFKNVTDCGGLR-PNVVTCTALVGALCKMGRVGEVCGLVQWME 222

Query: 83  NEGVVLDAVFYSSWICGYFEKGVLDE 6
            EG+ LD V YS+W CGY E+ VL E
Sbjct: 223 REGLGLDVVLYSAWACGYVEERVLGE 248


>ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
           lyrata] gi|297312031|gb|EFH42455.1| hypothetical protein
           ARALYDRAFT_495822 [Arabidopsis lyrata subsp. lyrata]
          Length = 821

 Score =  111 bits (278), Expect = 5e-23
 Identities = 55/87 (63%), Positives = 69/87 (79%)
 Frame = -3

Query: 263 SVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKME 84
           +VISGFCKIGKPELALGF++    SGVL  PN+VTYTA+VSALC+ G+V EV +LV ++E
Sbjct: 27  AVISGFCKIGKPELALGFFETAVDSGVL-VPNLVTYTAVVSALCQLGKVDEVRDLVRRLE 85

Query: 83  NEGVVLDAVFYSSWICGYFEKGVLDEA 3
           +EG   D VFYS+WI GYF+ G L +A
Sbjct: 86  DEGFEFDCVFYSNWIHGYFKGGALVDA 112



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/86 (34%), Positives = 50/86 (58%)
 Frame = -3

Query: 260 VISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMEN 81
           +I G  + G  E ALG    + K G+   PN++TYTAI+  LCK+G++++   L  ++ +
Sbjct: 134 LIDGLSREGNIEKALGLLGKMIKEGIE--PNLITYTAIIRGLCKKGKLEDAFVLFDRILS 191

Query: 80  EGVVLDAVFYSSWICGYFEKGVLDEA 3
            G+ +D   Y + I G  +KG L+ A
Sbjct: 192 FGIEVDEFLYVTLIDGICKKGNLNRA 217


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = -3

Query: 263 SVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKME 84
           +VISGFCKIGKPELALGF+++   SGVL  PN+VTYT +VSALC+ G+V EV +LV ++E
Sbjct: 176 AVISGFCKIGKPELALGFFESAVDSGVL-VPNLVTYTTLVSALCQLGKVDEVRDLVRRLE 234

Query: 83  NEGVVLDAVFYSSWICGYFEKGVLDEA 3
           +EG   D VFYS+WI GYF+ G L +A
Sbjct: 235 DEGFEFDCVFYSNWIHGYFKGGALVDA 261



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/86 (38%), Positives = 49/86 (56%)
 Frame = -3

Query: 260 VISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMEN 81
           +I G  K G  E ALG    + K GV   PN++TYTAI+  LCK G+++E   L +++ +
Sbjct: 283 LIDGLSKEGNVEEALGLLGKMIKEGVE--PNLITYTAIIRGLCKMGKLEEAFVLFNRILS 340

Query: 80  EGVVLDAVFYSSWICGYFEKGVLDEA 3
            G+ +D   Y + I G   KG L+ A
Sbjct: 341 VGIEVDEFLYVTLIDGICRKGNLNRA 366


>dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
          Length = 1012

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = -3

Query: 263 SVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKME 84
           +VISGFCKIGKPELALGF+++   SGVL  PN+VTYT +VSALC+ G+V EV +LV ++E
Sbjct: 217 AVISGFCKIGKPELALGFFESAVDSGVL-VPNLVTYTTLVSALCQLGKVDEVRDLVRRLE 275

Query: 83  NEGVVLDAVFYSSWICGYFEKGVLDEA 3
           +EG   D VFYS+WI GYF+ G L +A
Sbjct: 276 DEGFEFDCVFYSNWIHGYFKGGALVDA 302



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/86 (38%), Positives = 49/86 (56%)
 Frame = -3

Query: 260 VISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMEN 81
           +I G  K G  E ALG    + K GV   PN++TYTAI+  LCK G+++E   L +++ +
Sbjct: 324 LIDGLSKEGNVEEALGLLGKMIKEGVE--PNLITYTAIIRGLCKMGKLEEAFVLFNRILS 381

Query: 80  EGVVLDAVFYSSWICGYFEKGVLDEA 3
            G+ +D   Y + I G   KG L+ A
Sbjct: 382 VGIEVDEFLYVTLIDGICRKGNLNRA 407