BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041480
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18790.1| class S F-box protein [Nicotiana alata]                 65   8e-09
ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|35548...    61   8e-08
ref|XP_003610970.1| F-box/kelch-repeat protein [Medicago truncat...    60   1e-07
gb|ABX82525.1| S-locus F-box-like protein b [Petunia integrifoli...    60   2e-07
gb|ABR18789.1| class S F-box protein [Nicotiana alata]                 59   4e-07

>gb|ABR18790.1| class S F-box protein [Nicotiana alata]
          Length = 387

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
 Frame = -2

Query: 379 SDSWR---LISTNILYVDYMNWSHALLNGCLHWIASSTVNDKFATVILSLNVSTEEFSII 209
           +DSWR   L+  ++  VDY   S    NG  HW+ + T       VIL  ++STE F  I
Sbjct: 197 TDSWRELDLLDQHLPNVDYYPCSEKFYNGASHWLGNDTT-----LVILCFDMSTEIFRNI 251

Query: 208 QMPSNINGLEFSCYYELTVLREHL---CVTFPDSIGYKRET----WVMKEYGKFGSWAKE 50
           +MPS  +  +   Y  LTVL E L   C T+  ++  + E     W+MKEY    SW K+
Sbjct: 252 KMPSACHSNDGKSY-GLTVLNECLTLICYTYSSAVNDQAENLIDVWIMKEYDVNESWIKK 310

Query: 49  NVFIWELSLR 20
              I  LS++
Sbjct: 311 YTIIRTLSIK 320


>ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|355483283|gb|AES64486.1|
           F-box protein [Medicago truncatula]
          Length = 325

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
 Frame = -2

Query: 379 SDSWRLISTNILYVDYMNWSHALLNGCLHWIASSTVNDKFATVILSLNVSTEEFSIIQMP 200
           ++SW++I +    + Y+      +   LHW+ +  +++    +I++ N++ + F+++ +P
Sbjct: 106 TNSWKIIPSMPYALKYVQAMGIFVENSLHWVMTREIDESHPCLIVAFNLTLDIFNVVPLP 165

Query: 199 SNINGLEFSCYYELTVLREHLCVTFPDSIGYKR---ETWVMKEYGKFGSWAK 53
             +N   F     + VL   LC+T    + Y+    E WVMKEYG   SW K
Sbjct: 166 EEVNSESFE--INVVVLEGCLCMT----LNYRNTEFEVWVMKEYGSTDSWCK 211


>ref|XP_003610970.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355512305|gb|AES93928.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/86 (31%), Positives = 49/86 (56%)
 Frame = -2

Query: 310 LNGCLHWIASSTVNDKFATVILSLNVSTEEFSIIQMPSNINGLEFSCYYELTVLREHLCV 131
           ++  ++W+ S  +  +  + I+S ++  E +  I +P N  G++    + L VLR+ LC 
Sbjct: 254 VSSAINWLCSDEIQLRNPSFIVSYDLGKESYQKI-LPPNYGGVDVCKLWTLDVLRDCLCA 312

Query: 130 TFPDSIGYKRETWVMKEYGKFGSWAK 53
           T  D++   ++ W+MKEYG  GSW K
Sbjct: 313 TSGDNVWAMKDVWIMKEYGNVGSWIK 338


>gb|ABX82525.1| S-locus F-box-like protein b [Petunia integrifolia subsp. inflata]
          Length = 394

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
 Frame = -2

Query: 376 DSWR---LISTNILYVDYMNWSHALLNGCLHWIASSTVNDKFATVILSLNVSTEEFSIIQ 206
           DSWR    +   +  V Y      L NG  HW A   +ND+F  VILS ++STE F  I+
Sbjct: 203 DSWRDLNHVDQQLPTVYYYPCFERLYNGAFHWYA---INDRFDHVILSFDISTEIFHSIK 259

Query: 205 MPSNINGLEFSCYYELTVLREHL-CVTFP------DSIGYKRETWVMKEYGKFGSWAKEN 47
           MP+  +       Y L VL E L  + +P      D      + W+M+EYG + SW K+ 
Sbjct: 260 MPAT-DKSSGGKKYALIVLNESLTLICYPNPDCEMDPSKDSMDIWIMEEYGVYESWTKKY 318

Query: 46  V 44
           +
Sbjct: 319 I 319


>gb|ABR18789.1| class S F-box protein [Nicotiana alata]
          Length = 394

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
 Frame = -2

Query: 379 SDSWRLISTNILYVDYMNW---SHALLNGCLHWIASSTVNDKFATVILSLNVSTEEFSII 209
           +DSWR +    L + Y++W   S    +G  HW  ++        VIL  ++STE F  +
Sbjct: 206 TDSWRELDQVNLQLPYVHWNPCSDMFYSGASHWFGNANT-----VVILCFDLSTETFRNM 260

Query: 208 QMPSNINGLEFSCYYELTVLREHL---CVTFP----DSIGYKRETWVMKEYGKFGSWAKE 50
           +MP+  +  +  C Y L VL E+L   C  +P    D +    + W+MK+YG   SW K+
Sbjct: 261 KMPNTCHSRDEKC-YGLVVLNEYLTLICYPYPGKVIDPLKDFMDIWMMKDYGVNESWIKK 319