BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041447
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...   145   4e-33
gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptas...   144   7e-33
gb|ABA96744.1| retrotransposon protein, putative, Ty3-gypsy subc...   144   1e-32
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap...   143   1e-32
gb|AAV31373.1| putative polyprotein [Oryza sativa Japonica Group]     143   1e-32

>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score =  145 bits (365), Expect = 4e-33
 Identities = 66/92 (71%), Positives = 77/92 (83%)
 Frame = +2

Query: 8   EEHDKHLEITLQILREHKLYGKLSKCEFWLSEVKFLGHVVSGDGISVDPSKVEAVIDWPR 187
           +EH++HL I LQ L+E KLY K SKCEFWL +V FLGHV+SGDGI VDP+K+EAV  WPR
Sbjct: 377 KEHEEHLRIVLQTLKEKKLYAKFSKCEFWLKQVSFLGHVISGDGIQVDPAKIEAVSKWPR 436

Query: 188 PTTVTGIRSFLGLAGYYRRFVEGFSTISGPLT 283
           PTTVT IRSFLGLAGYYR+FV+ FS I+ PLT
Sbjct: 437 PTTVTEIRSFLGLAGYYRKFVQDFSKIATPLT 468


>gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 579

 Score =  144 bits (363), Expect = 7e-33
 Identities = 68/94 (72%), Positives = 77/94 (81%)
 Frame = +2

Query: 2   TREEHDKHLEITLQILREHKLYGKLSKCEFWLSEVKFLGHVVSGDGISVDPSKVEAVIDW 181
           T EEH +HL+I LQ+L+E KLY KLSKCEFWL EV FLGHV+SGDGI VDPSKVEAV  W
Sbjct: 361 TEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIVVDPSKVEAVSQW 420

Query: 182 PRPTTVTGIRSFLGLAGYYRRFVEGFSTISGPLT 283
             P +VT IRS LGLAGYYRRF+EGFS ++ PLT
Sbjct: 421 ETPKSVTEIRSLLGLAGYYRRFIEGFSKLALPLT 454


>gb|ABA96744.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 839

 Score =  144 bits (362), Expect = 1e-32
 Identities = 64/94 (68%), Positives = 80/94 (85%)
 Frame = +2

Query: 2   TREEHDKHLEITLQILREHKLYGKLSKCEFWLSEVKFLGHVVSGDGISVDPSKVEAVIDW 181
           T+EEH++HL +TL+ LREH+LY K SKCEFWLSEVKFLGHV+S  G++VDPS VE+V +W
Sbjct: 64  TKEEHEEHLRLTLEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNW 123

Query: 182 PRPTTVTGIRSFLGLAGYYRRFVEGFSTISGPLT 283
            +P TV+ IRSFLGLAGYYRRF+E FS I+ P+T
Sbjct: 124 KQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMT 157


>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
           gi|20042905|gb|AAM08733.1|AC116601_26 Putative
           polyprotein [Oryza sativa Japonica Group]
           gi|31429938|gb|AAP51922.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1443

 Score =  143 bits (361), Expect = 1e-32
 Identities = 63/94 (67%), Positives = 80/94 (85%)
 Frame = +2

Query: 2   TREEHDKHLEITLQILREHKLYGKLSKCEFWLSEVKFLGHVVSGDGISVDPSKVEAVIDW 181
           T+EEH++HL + L++LREH+LY K SKCEFWLSEVKFLGHV+S  G++VDPS VE+V +W
Sbjct: 668 TKEEHEEHLRLALEMLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNW 727

Query: 182 PRPTTVTGIRSFLGLAGYYRRFVEGFSTISGPLT 283
            +P TV+ IRSFLGLAGYYRRF+E FS I+ P+T
Sbjct: 728 KQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMT 761


>gb|AAV31373.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 2408

 Score =  143 bits (361), Expect = 1e-32
 Identities = 64/94 (68%), Positives = 79/94 (84%)
 Frame = +2

Query: 2   TREEHDKHLEITLQILREHKLYGKLSKCEFWLSEVKFLGHVVSGDGISVDPSKVEAVIDW 181
           T+EEH++HL + L+ LREH+LY K SKCEFWLSEVKFLGHV+S  G++VDPS VE+V+ W
Sbjct: 706 TKEEHEEHLRLALEKLREHQLYAKSSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSW 765

Query: 182 PRPTTVTGIRSFLGLAGYYRRFVEGFSTISGPLT 283
            +P TVT IRSFLGLAGYYRRF+E FS I+ P+T
Sbjct: 766 KQPKTVTEIRSFLGLAGYYRRFIENFSKIARPMT 799