BLASTX nr result
ID: Coptis23_contig00041348
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00041348
(286 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containi... 147 9e-34
emb|CBI36234.3| unnamed protein product [Vitis vinifera] 147 9e-34
ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 144 1e-32
ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containi... 141 5e-32
>ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 147 bits (371), Expect = 9e-34
Identities = 66/95 (69%), Positives = 80/95 (84%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
+Y+ L+RLCEWKRA EG +V++ V T L +RLGNALLSMFVRFG L EAW+VFGKM
Sbjct: 96 TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRMLWAG 285
ERD+FSWNV+VGGYAK+G+FDEAL+LY+RMLW G
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
++ C++R C G +V+ V + + NAL++M+V+ G +F A VF +M
Sbjct: 197 TFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRM 256
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRM 273
RD SWN M+ GY ++ E L L++ M
Sbjct: 257 PRRDRISWNAMISGYFENDVCLEGLRLFFMM 287
>emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 147 bits (371), Expect = 9e-34
Identities = 66/95 (69%), Positives = 80/95 (84%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
+Y+ L+RLCEWKRA EG +V++ V T L +RLGNALLSMFVRFG L EAW+VFGKM
Sbjct: 96 TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRMLWAG 285
ERD+FSWNV+VGGYAK+G+FDEAL+LY+RMLW G
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
++ C++R C G +V+ V + + NAL++M+V+ G +F A VF +M
Sbjct: 197 TFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRM 256
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRM 273
RD SWN M+ GY ++ E L L++ M
Sbjct: 257 PRRDRISWNAMISGYFENDVCLEGLRLFFMM 287
>ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 144 bits (362), Expect = 1e-32
Identities = 65/94 (69%), Positives = 79/94 (84%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
+Y+ L+RLCEW+RA EG +VY V + + L +RLGNALLSMFVRFG L +AW+VFGKM
Sbjct: 99 AYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKM 158
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRMLWA 282
ERDVFSWNV+VGGYAK+G FDEAL+LY+RMLWA
Sbjct: 159 SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +1
Query: 52 GGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKMEERDVFSWNVMVGGYAK 231
G +++A V + +GNAL++M+V+ G + A +F KM +RD SWN M+ GY +
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276
Query: 232 SGFFDEALSLYYRM 273
+G E L L+ M
Sbjct: 277 NGGGLEGLELFSMM 290
>ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 144 bits (362), Expect = 1e-32
Identities = 65/94 (69%), Positives = 79/94 (84%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
+Y+ L+RLCEW+RA EG +VY V + + L +RLGNALLSMFVRFG L +AW+VFGKM
Sbjct: 99 AYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKM 158
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRMLWA 282
ERDVFSWNV+VGGYAK+G FDEAL+LY+RMLWA
Sbjct: 159 SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +1
Query: 52 GGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKMEERDVFSWNVMVGGYAK 231
G +++A V + +GNAL++M+V+ G + A +F KM +RD SWN M+ GY +
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276
Query: 232 SGFFDEALSLYYRM 273
+G E L L+ M
Sbjct: 277 NGGGLEGLELFSMM 290
>ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 141 bits (356), Expect = 5e-32
Identities = 64/95 (67%), Positives = 80/95 (84%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
+YV L+RLCEWKRA EG +VY+ V + LS++LGNALLSMFVRFG L +AW+VFG+M
Sbjct: 108 AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRM 167
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRMLWAG 285
E+R++FSWNV+VGGYAK+G FDEAL LY+RMLW G
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202
Score = 55.8 bits (133), Expect = 4e-06
Identities = 29/92 (31%), Positives = 48/92 (52%)
Frame = +1
Query: 1 SYVCLVRLCEWKRAGYEGGKVYAQVCNLNTLLSIRLGNALLSMFVRFGKLFEAWFVFGKM 180
++ C++R C G +++ V + + NAL++M+V+ G + A VF KM
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268
Query: 181 EERDVFSWNVMVGGYAKSGFFDEALSLYYRML 276
RD SWN M+ GY ++G E L L+ M+
Sbjct: 269 PNRDRISWNAMISGYFENGVCLEGLRLFGMMI 300