BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041323
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis...   226   2e-57
gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla...   224   4e-57
gb|AAZ03982.1| RNA polymerase beta'' chain [Ranunculus macranthus]    224   6e-57
ref|YP_001004176.1| RNA polymerase beta' subunit [Ranunculus mac...   224   6e-57
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap...   223   1e-56

>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
           gi|226933872|gb|ACO92005.1| RNA polymerase beta''
           subunit [Megaleranthis saniculifolia]
          Length = 1383

 Score =  226 bits (575), Expect = 2e-57
 Identities = 110/119 (92%), Positives = 114/119 (95%)
 Frame = -2

Query: 359 AGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMITERILIQTLIGRVLADDIYIDSQ 180
           AGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMITERI IQTLIGRVLADDIY+ S+
Sbjct: 199 AGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMITERIFIQTLIGRVLADDIYMGSR 258

Query: 179 CIAIRKKDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 3
           CIAIR +DIG+GLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRS THGDLVELGEA
Sbjct: 259 CIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 317


>gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
           praecox]
          Length = 1280

 Score =  224 bits (572), Expect = 4e-57
 Identities = 108/119 (90%), Positives = 114/119 (95%)
 Frame = -2

Query: 359 AGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMITERILIQTLIGRVLADDIYIDSQ 180
           AGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGM+ ERI IQTLIGRVLADDIY+DS+
Sbjct: 172 AGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMPERIFIQTLIGRVLADDIYMDSR 231

Query: 179 CIAIRKKDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 3
           CIAIR +DIG+GLVNRFITFR QPISIRTPFTCRSTSWICRLCYGRSSTHGDL+ELGEA
Sbjct: 232 CIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSSTHGDLIELGEA 290


>gb|AAZ03982.1| RNA polymerase beta'' chain [Ranunculus macranthus]
          Length = 1376

 Score =  224 bits (571), Expect = 6e-57
 Identities = 109/119 (91%), Positives = 114/119 (95%)
 Frame = -2

Query: 359 AGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMITERILIQTLIGRVLADDIYIDSQ 180
           AGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMITERI IQTLIGRVLADD+Y+ S+
Sbjct: 202 AGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPRNGMITERIFIQTLIGRVLADDLYMGSR 261

Query: 179 CIAIRKKDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 3
           CIAIR +DIGVGLVNRFITFR+QPISIRTPFTCRSTSWICRLCYGRS THGDLVELGEA
Sbjct: 262 CIAIRNQDIGVGLVNRFITFRSQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 320


>ref|YP_001004176.1| RNA polymerase beta' subunit [Ranunculus macranthus]
           gi|212288348|sp|A1XGM8.1|RPOC2_RANMC RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|85540794|gb|ABC70746.1| RNA polymerase beta'
           subunit [Ranunculus macranthus]
          Length = 1383

 Score =  224 bits (571), Expect = 6e-57
 Identities = 109/119 (91%), Positives = 114/119 (95%)
 Frame = -2

Query: 359 AGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMITERILIQTLIGRVLADDIYIDSQ 180
           AGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMITERI IQTLIGRVLADD+Y+ S+
Sbjct: 199 AGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPRNGMITERIFIQTLIGRVLADDLYMGSR 258

Query: 179 CIAIRKKDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 3
           CIAIR +DIGVGLVNRFITFR+QPISIRTPFTCRSTSWICRLCYGRS THGDLVELGEA
Sbjct: 259 CIAIRNQDIGVGLVNRFITFRSQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 317


>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
          Length = 1390

 Score =  223 bits (569), Expect = 1e-56
 Identities = 109/119 (91%), Positives = 114/119 (95%)
 Frame = -2

Query: 359 AGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMITERILIQTLIGRVLADDIYIDSQ 180
           AGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGM+ ERILIQTLIGRVLADDIY+DS+
Sbjct: 203 AGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMPERILIQTLIGRVLADDIYMDSR 262

Query: 179 CIAIRKKDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 3
           CIAIR +DIG+GLVNRFITFR Q ISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA
Sbjct: 263 CIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSSTHGDLVELGEA 321