BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041320
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521980.1| pentatricopeptide repeat-containing protein,...   130   1e-28
ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28
emb|CBI22375.3| unnamed protein product [Vitis vinifera]              127   9e-28
ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containi...   127   9e-28
ref|XP_003590960.1| Pentatricopeptide repeat-containing protein ...   125   3e-27

>ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538784|gb|EEF40384.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  130 bits (326), Expect = 1e-28
 Identities = 72/111 (64%), Positives = 80/111 (72%), Gaps = 11/111 (9%)
 Frame = +2

Query: 2   LNRSCKEGNYTEALYILESNVSNGYKPHVIFCTKLMKGFFNS----KAVRVMEILELYGE 169
           LNRSC+ G Y E+LY LE  V  GY P VI CTKL+KGFFNS    KA RVMEILE YG+
Sbjct: 76  LNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGK 135

Query: 170 PDVF---ALISGLCKANRIEFATKVLD----RGCLHDVVTYNILIGSLCSR 301
           PDVF   ALISG  KAN++E A +VLD    RG L DVVTYNI+IGS CSR
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSR 186


>ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  128 bits (321), Expect = 5e-28
 Identities = 69/111 (62%), Positives = 83/111 (74%), Gaps = 11/111 (9%)
 Frame = +2

Query: 2   LNRSCKEGNYTEALYILESNVSNGYKPHVIFCTKLMKGFFNS----KAVRVMEILELYGE 169
           LNRSC+ G + E+LY LES VS G+KP V+ CTKL+KGFFNS    KA+RVMEILE YG+
Sbjct: 69  LNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGD 128

Query: 170 PDVF---ALISGLCKANRIEFATKVLD----RGCLHDVVTYNILIGSLCSR 301
           PDV+   A+ISG  KAN+I+ A +V D    RG   DVVTYNI+IGSLCSR
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSR 179


>emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  127 bits (319), Expect = 9e-28
 Identities = 70/111 (63%), Positives = 81/111 (72%), Gaps = 11/111 (9%)
 Frame = +2

Query: 2   LNRSCKEGNYTEALYILESNVSNGYKPHVIFCTKLMKGFFN----SKAVRVMEILELYGE 169
           LNRSCK G + E+LY LE  V+ GY P VI CTKL+KGFFN     KA RVMEILE + E
Sbjct: 75  LNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTE 134

Query: 170 PDVF---ALISGLCKANRIEFATKVLD----RGCLHDVVTYNILIGSLCSR 301
           PDVF   A+ISG CK NRIE AT+VL+    RG L D+VTYNI+IGSLC+R
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185


>ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  127 bits (319), Expect = 9e-28
 Identities = 70/111 (63%), Positives = 81/111 (72%), Gaps = 11/111 (9%)
 Frame = +2

Query: 2   LNRSCKEGNYTEALYILESNVSNGYKPHVIFCTKLMKGFFN----SKAVRVMEILELYGE 169
           LNRSCK G + E+LY LE  V+ GY P VI CTKL+KGFFN     KA RVMEILE + E
Sbjct: 75  LNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTE 134

Query: 170 PDVF---ALISGLCKANRIEFATKVLD----RGCLHDVVTYNILIGSLCSR 301
           PDVF   A+ISG CK NRIE AT+VL+    RG L D+VTYNI+IGSLC+R
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185


>ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480008|gb|AES61211.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  125 bits (315), Expect = 3e-27
 Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 11/111 (9%)
 Frame = +2

Query: 2   LNRSCKEGNYTEALYILESNVSNGYKPHVIFCTKLMKGFFN----SKAVRVMEILELYGE 169
           LNRSCK   Y E+LY L+  V+ GYKP VI CTKL+KGFFN     KA++VMEILE +G+
Sbjct: 84  LNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGK 143

Query: 170 PDVF---ALISGLCKANRIEFATKVLD----RGCLHDVVTYNILIGSLCSR 301
           PDVF   A+ISG CKA+R++ A+KVLD    RG   DVVTYNILIG+ C R
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGR 194