BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041275
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat...   167   8e-40
ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat...   157   1e-36
ref|XP_002512645.1| pentatricopeptide repeat-containing protein,...   157   1e-36
ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|2...   154   5e-36
ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat...   151   6e-35

>ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  167 bits (423), Expect = 8e-40
 Identities = 74/104 (71%), Positives = 94/104 (90%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LIDMYAKCGSIK+AR +FD MN+ DEVSWN+MISGYS+HGLG +AL +++KM+ETEVKP+
Sbjct: 280 LIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPD 339

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIEPCIEHYTCMV 2
           K+TFVGVLSAC+N G ++QG++YF  M +++GIEPCIEHYTCMV
Sbjct: 340 KLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMV 383



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+D+YAKCG ++N+  +F      ++V+WN++I G+   G G  AL L+  M E  V+  
Sbjct: 179 LMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT 238

Query: 133 KITFVGVLSACSNTGQVEQG 74
           ++T+   L AC++   +E G
Sbjct: 239 EVTYSSALRACASLAALEPG 258


>ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
           gi|449515059|ref|XP_004164567.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At5g13230,
           mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  157 bits (396), Expect = 1e-36
 Identities = 68/104 (65%), Positives = 91/104 (87%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LIDMYAKCGSIK+ARFMFD ++  D+VSWN++I GYS+HGLG +A+ ++  MKET+ KP+
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD 449

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIEPCIEHYTCMV 2
           ++TFVGVLSACSNTG++++G+ YF  M ++YGIEPC+EHYTCMV
Sbjct: 450 ELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMV 493



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/82 (36%), Positives = 45/82 (54%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LID Y+  G +  AR +FD ++  D VSW  MI+ Y+ +    +AL  + +M+    KPN
Sbjct: 87  LIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPN 146

Query: 133 KITFVGVLSACSNTGQVEQGRS 68
             TF GVL AC      + G++
Sbjct: 147 NFTFAGVLKACLGLQNFDAGKT 168



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 48/80 (60%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+  YAKCG I+ +  +F+ +++ ++VSWN++I  Y   G G  AL L+  M   +V+  
Sbjct: 289 LMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQAT 348

Query: 133 KITFVGVLSACSNTGQVEQG 74
           ++T+  +L AC+    +E G
Sbjct: 349 EVTYSSILRACATLAALELG 368


>ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548606|gb|EEF50097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 716

 Score =  157 bits (396), Expect = 1e-36
 Identities = 69/104 (66%), Positives = 88/104 (84%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LIDMYAKCGSIKNAR +FD ++E DE+SWN+MISGYS+HGL G+AL  ++ M+ETE  PN
Sbjct: 385 LIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPN 444

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIEPCIEHYTCMV 2
           K+TFV +LSACSN G ++ G++YF  M ++YGIEPC+EHYTCMV
Sbjct: 445 KLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMV 488



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/80 (41%), Positives = 52/80 (65%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+D+YAKCG + N+  +F  +   +EV+WN+MI GY   G G  AL LY+ M E +V+ +
Sbjct: 284 LMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQAS 343

Query: 133 KITFVGVLSACSNTGQVEQG 74
           ++T+  VL AC++   +E G
Sbjct: 344 EVTYSSVLRACASLAAMELG 363



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 34/89 (38%), Positives = 48/89 (53%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LID YA CGS+ +AR  FD +   D VSW  M++ Y+ +    D+L L+ +M+     PN
Sbjct: 82  LIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPN 141

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYR 47
             TF GVL AC        G+S   C+ +
Sbjct: 142 HFTFAGVLKACIGLEAFSVGKSVHGCVLK 170



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/81 (30%), Positives = 46/81 (56%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+D+Y K G   +   +F+ M + D + W+ MIS Y+      +A+ L+ +M+   V PN
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 133 KITFVGVLSACSNTGQVEQGR 71
           + TF  VL +C++   ++ G+
Sbjct: 243 QFTFASVLQSCASIENLQLGK 263


>ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|222842084|gb|EEE79631.1|
           predicted protein [Populus trichocarpa]
          Length = 820

 Score =  154 bits (390), Expect = 5e-36
 Identities = 69/104 (66%), Positives = 86/104 (82%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LIDMYAKCG+IK+AR +FD + E D+VSWN+MISGYS+HGL G+AL  +E M ETE KP+
Sbjct: 489 LIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIEPCIEHYTCMV 2
           K+TFVG+LSACSN G +++G++YF  M  EY IEPC EHYTCMV
Sbjct: 549 KVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMV 592



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/80 (40%), Positives = 50/80 (62%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+DMYAKCG ++N+  +F       +VSWN++I GY   G G  AL+L++ M E +V+  
Sbjct: 388 LMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGT 447

Query: 133 KITFVGVLSACSNTGQVEQG 74
           ++T+  VL AC+    +E G
Sbjct: 448 EVTYSSVLRACAGIAALEPG 467



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/94 (32%), Positives = 48/94 (51%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LID Y+ CG  + AR +FD +   D VSW  M++ Y  +    ++L L+ +M+    KPN
Sbjct: 186 LIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPN 245

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIE 32
             TF  VL AC        G++   C ++   +E
Sbjct: 246 NFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLE 279


>ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  151 bits (381), Expect = 6e-35
 Identities = 67/104 (64%), Positives = 87/104 (83%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LIDMYAKCG I +AR  FD M++ DEVSWN++I GYS+HGLG +AL L++ M+++  KPN
Sbjct: 449 LIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPN 508

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDCMYREYGIEPCIEHYTCMV 2
           K+TFVGVLSACSN G +++GR++F  M ++YGIEPCIEHYTCMV
Sbjct: 509 KLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/81 (39%), Positives = 51/81 (62%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           L+D+YAKCG I+N+  +F    E +EV+WN++I GY   G G  AL L+  M   +++P 
Sbjct: 348 LMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPT 407

Query: 133 KITFVGVLSACSNTGQVEQGR 71
           ++T+  VL A ++   +E GR
Sbjct: 408 EVTYSSVLRASASLVALEPGR 428



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETEVKPN 134
           LID Y+ CG++  AR +FD +   D VSW  M++ Y+ +    D+L+L+ +M+    +PN
Sbjct: 145 LIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPN 204

Query: 133 KITFVGVLSACSNTGQVEQGRSYFDC 56
             T    L +C+     + G+S   C
Sbjct: 205 NFTISAALKSCNGLEAFKVGKSVHGC 230



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -3

Query: 313 LIDMYAKCGSIKNARFMFDTMNELDEVSWNSMISGYSLHGLGGDALMLYEKMKETE-VKP 137
           L+++Y K G I  A+  F+ M + D + W+ MIS Y+      +AL L+ +M+++  V P
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 136 NKITFVGVLSACSNTGQVEQGRSYFDCMYR 47
           N  TF  VL AC++   +  G     C+ +
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLK 335