BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041247
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containi...   167   1e-39
gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]            129   3e-28
ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28
emb|CBI27471.3| unnamed protein product [Vitis vinifera]              122   3e-26
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26

>ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  167 bits (422), Expect = 1e-39
 Identities = 73/108 (67%), Positives = 95/108 (87%)
 Frame = -2

Query: 337 ERFISIMPIEPDNVIWGSLLNACRIHGNVELGERVGSLLIESDRGHDGRYVLLSNIYAES 158
           E+F++ MPI+PDNVIWG+LL ACR++GN E+G+RVGSLL+ESD+ HDGRY+LLSNIYAES
Sbjct: 381 EKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAES 440

Query: 157 RKGDESEEIQKAMRRRKVKRVPGCSSIEVNGVVHEFVAGDTSHDRIDE 14
            KG+++E+++K MRRRKV RVPGCS IEV G VHEF +GD SH++ +E
Sbjct: 441 MKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEE 488


>gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  129 bits (323), Expect = 3e-28
 Identities = 58/107 (54%), Positives = 79/107 (73%)
 Frame = -2

Query: 334 RFISIMPIEPDNVIWGSLLNACRIHGNVELGERVGSLLIESDRGHDGRYVLLSNIYAESR 155
           RFI  MP++P+ VIWGSLL AC+IH N+ELGE++G +LIE D  H GRYV ++NI+A  +
Sbjct: 401 RFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGK 460

Query: 154 KGDESEEIQKAMRRRKVKRVPGCSSIEVNGVVHEFVAGDTSHDRIDE 14
           K D++ E ++ MR + V +VPGCS+I + G  HEF+AGD SH  I E
Sbjct: 461 KWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQE 507


>ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  127 bits (320), Expect = 7e-28
 Identities = 57/104 (54%), Positives = 77/104 (74%)
 Frame = -2

Query: 328 ISIMPIEPDNVIWGSLLNACRIHGNVELGERVGSLLIESDRGHDGRYVLLSNIYAESRKG 149
           I  MP +P++ IWG+LLNACRIHG+ ELGE+VG  L+E D  H GRYVLLSNIYA   + 
Sbjct: 428 IKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRW 487

Query: 148 DESEEIQKAMRRRKVKRVPGCSSIEVNGVVHEFVAGDTSHDRID 17
           D   E+++ MR R+V + PGCS I++   +HEFVAGD+SH +++
Sbjct: 488 DRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLE 531


>emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  122 bits (306), Expect = 3e-26
 Identities = 52/108 (48%), Positives = 80/108 (74%)
 Frame = -2

Query: 337 ERFISIMPIEPDNVIWGSLLNACRIHGNVELGERVGSLLIESDRGHDGRYVLLSNIYAES 158
           E  I  MP++P+  IWG+LLNAC IHGN+ELG+++G +LI+ D GH GRY+ L++I+A +
Sbjct: 359 EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAA 418

Query: 157 RKGDESEEIQKAMRRRKVKRVPGCSSIEVNGVVHEFVAGDTSHDRIDE 14
            + +++  +++ M+ + V ++PGCS I VNG  HEF+AGD SH +I E
Sbjct: 419 GEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 466


>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  122 bits (306), Expect = 3e-26
 Identities = 52/108 (48%), Positives = 80/108 (74%)
 Frame = -2

Query: 337 ERFISIMPIEPDNVIWGSLLNACRIHGNVELGERVGSLLIESDRGHDGRYVLLSNIYAES 158
           E  I  MP++P+  IWG+LLNAC IHGN+ELG+++G +LI+ D GH GRY+ L++I+A +
Sbjct: 407 EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAA 466

Query: 157 RKGDESEEIQKAMRRRKVKRVPGCSSIEVNGVVHEFVAGDTSHDRIDE 14
            + +++  +++ M+ + V ++PGCS I VNG  HEF+AGD SH +I E
Sbjct: 467 GEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 514