BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041234
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
emb|CBI38763.3| unnamed protein product [Vitis vinifera]              155   4e-36
ref|XP_002511804.1| pentatricopeptide repeat-containing protein,...   145   4e-33
ref|XP_003623821.1| Pentatricopeptide repeat-containing protein ...   133   2e-29
ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   132   3e-29

>ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  155 bits (391), Expect = 4e-36
 Identities = 69/101 (68%), Positives = 85/101 (84%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           FD N FV+TGLVD+YAKCK +LEAEYLF+   DK+N+VLWTAM+TGYSQNGDG +A+ECF
Sbjct: 169 FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECF 228

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           RDM+ E +E NQFTFPS+LTAC +++A  FG QVH CI +S
Sbjct: 229 RDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS 269



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/101 (36%), Positives = 56/101 (55%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F+    V   LVD+YAK      A  +F+K+ DK + + WT+++TG   NG    A+  F
Sbjct: 372 FEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDK-DVISWTSLVTGCVHNGSYEEALRLF 430

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
            +M+   + P+Q    +VL+ACA L   +FG QVH+   KS
Sbjct: 431 CEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS 471



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/101 (34%), Positives = 56/101 (55%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F  NVFV + LVD+Y+KC  +  A  + + + +  + V W +MI G  + G G  A+  F
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETM-EVDDPVSWNSMIVGCVRQGLGEEALSLF 329

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           R M    ++ ++FT+PSVL   + +   +  M VHS I K+
Sbjct: 330 RIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKT 370



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/91 (32%), Positives = 52/91 (57%)
 Frame = -3

Query: 275 LVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDMKAEDVEP 96
           ++  YA   R+ EA  LF +    ++ + W+++I+GY + G  + A+E F +M+ E   P
Sbjct: 78  MIGAYANSGRLNEARKLFYET-PIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERP 136

Query: 95  NQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           NQFT+ SVL  C+     + G Q+H+   K+
Sbjct: 137 NQFTWGSVLRVCSMYVLLEKGKQIHAHAIKT 167


>emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  155 bits (391), Expect = 4e-36
 Identities = 69/101 (68%), Positives = 85/101 (84%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           FD N FV+TGLVD+YAKCK +LEAEYLF+   DK+N+VLWTAM+TGYSQNGDG +A+ECF
Sbjct: 169 FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECF 228

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           RDM+ E +E NQFTFPS+LTAC +++A  FG QVH CI +S
Sbjct: 229 RDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS 269



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/91 (32%), Positives = 52/91 (57%)
 Frame = -3

Query: 275 LVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDMKAEDVEP 96
           ++  YA   R+ EA  LF +    ++ + W+++I+GY + G  + A+E F +M+ E   P
Sbjct: 78  MIGAYANSGRLNEARKLFYET-PIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERP 136

Query: 95  NQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           NQFT+ SVL  C+     + G Q+H+   K+
Sbjct: 137 NQFTWGSVLRVCSMYVLLEKGKQIHAHAIKT 167


>ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548984|gb|EEF50473.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 607

 Score =  145 bits (365), Expect = 4e-33
 Identities = 65/100 (65%), Positives = 81/100 (81%)
 Frame = -3

Query: 302 DDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFR 123
           D NVFV+T LVD+YAKC+ + EAEY+F+ V D KN+  WTAM+TGYS NGDG RA++CFR
Sbjct: 151 DANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFR 210

Query: 122 DMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           DM+AE VE NQFTFPS+LTAC A++   FG+QVH CI +S
Sbjct: 211 DMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRS 250



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 44/101 (43%), Positives = 60/101 (59%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F     V   LVD+YAK   +  A  +F ++ DK + V WT+++TGYS NG    A++ F
Sbjct: 353 FGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDK-DVVSWTSLVTGYSYNGSYEDAIKLF 411

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
            DM+   V P+Q    SVL+ACA L  T+FG QVH+ I KS
Sbjct: 412 CDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATILKS 452



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/101 (31%), Positives = 56/101 (55%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F  N+FV + LVD+YAKC+ +  A  + + + +  + V W +MI G  + G    A+  F
Sbjct: 252 FGANIFVQSALVDMYAKCRDLNSANRVLENM-EVNDVVSWNSMIVGCVREGFEAEALSLF 310

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
            +M A D++ + +T+PSVL + A++   +     H  I K+
Sbjct: 311 NEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKT 351



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/90 (32%), Positives = 49/90 (54%)
 Frame = -3

Query: 275 LVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDMKAEDVEP 96
           LV +YAKC  + +A Y+F  +   ++ + WTA+I GY+QNG G  ++  +  M A   +P
Sbjct: 464 LVTMYAKCGGIEDANYVFDSM-QIRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKP 522

Query: 95  NQFTFPSVLTACAALAATKFGMQVHSCIAK 6
           +  TF  +L AC+     + G +    + K
Sbjct: 523 DFITFIGLLFACSHTGLVEDGRRYFESMDK 552


>ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498836|gb|AES80039.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  133 bits (334), Expect = 2e-29
 Identities = 65/102 (63%), Positives = 83/102 (81%), Gaps = 1/102 (0%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVG-DKKNNVLWTAMITGYSQNGDGLRAMEC 129
           F+ NVFV+TGLVD+YAKCK V EAE+LFK +  D+KN+VLWTAM+TGY+QNGDG +A+E 
Sbjct: 193 FEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEF 252

Query: 128 FRDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           FR M A+ VE NQ+TFP++LTAC+++ A  FG QVH  I KS
Sbjct: 253 FRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS 294



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/101 (38%), Positives = 61/101 (60%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F++   V   LVD+YAK   +  A  +F+K+ +K + + WT+++TGY+QN     +++ F
Sbjct: 395 FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEK-DVISWTSLVTGYAQNNSHEESLKIF 453

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
            DM+   V P+QF   S+L+ACA L   +FG QVH    KS
Sbjct: 454 CDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 56/101 (55%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F  NV+V + LVD+YAKC  +  A+ + + + D  + V W +++ G+ ++G    A+  F
Sbjct: 296 FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDD-DVVSWNSLMVGFVRHGLEEEALRLF 354

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           ++M   +++ + +TFPSVL  C   +       VH  I K+
Sbjct: 355 KNMHGRNMKIDDYTFPSVLNCCVVGSINP--KSVHGLIIKT 393



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/91 (30%), Positives = 51/91 (56%)
 Frame = -3

Query: 275 LVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDMKAEDVEP 96
           ++  Y    R++EA  LF     K +++ W+++I+GY + G  + A + FR M+ E  + 
Sbjct: 102 MISSYVNVGRLVEARELFDGCSCK-SSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKA 160

Query: 95  NQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
           +QFT  SVL  C++L   + G  +H  + K+
Sbjct: 161 SQFTLGSVLRVCSSLGLIQTGEMIHGFVVKN 191


>ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  132 bits (332), Expect = 3e-29
 Identities = 57/95 (60%), Positives = 78/95 (82%)
 Frame = -3

Query: 296 NVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDM 117
           N+FV TGLVD+Y+KCK +LEAEYLF  + D+KN V WTAM+TGY+QNG+ L+A++CF++M
Sbjct: 168 NIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEM 227

Query: 116 KAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCI 12
           + + +E N FTFPS+LTAC +++A  FG QVH CI
Sbjct: 228 RNQGMESNHFTFPSILTACTSISAYAFGRQVHGCI 262



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 40/101 (39%), Positives = 58/101 (57%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           FD    V   LVD+YAK   +  A  +F K+ DK + + WT+++TGY  NG   +A++ F
Sbjct: 368 FDACKTVSNALVDMYAKQGNLSCALDVFNKILDK-DVISWTSLVTGYVHNGFHEKALQLF 426

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
            DM+   V+ +QF    V +ACA L   +FG QVH+   KS
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKS 467



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -3

Query: 305 FDDNVFVLTGLVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECF 126
           F  NV+V + LVD+YAKC  +  A  +   + +  + V W +MI G   +G    A+  F
Sbjct: 267 FGPNVYVQSALVDMYAKCGDLASARMILDTM-EIDDVVCWNSMIVGCVTHGYMEEALVLF 325

Query: 125 RDMKAEDVEPNQFTFPSVLTACAALAATKFGMQVHSCIAKS 3
             M   D+  + FT+PSVL + A+    K G  VHS   K+
Sbjct: 326 HKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/85 (29%), Positives = 48/85 (56%)
 Frame = -3

Query: 275 LVDVYAKCKRVLEAEYLFKKVGDKKNNVLWTAMITGYSQNGDGLRAMECFRDMKAEDVEP 96
           ++  YA    ++EA  LF +     N++ W+++++GY +NG  +  +  F  M ++  +P
Sbjct: 74  MISAYANLGNLVEARKLFNET-PIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKP 132

Query: 95  NQFTFPSVLTACAALAATKFGMQVH 21
           +Q+T  SVL AC+ L+    G  +H
Sbjct: 133 SQYTLGSVLRACSTLSLLHTGKMIH 157