BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041203
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|2...    61   8e-08
emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]    60   2e-07
ref|XP_002516576.1| pentatricopeptide repeat-containing protein,...    57   2e-06

>ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Vitis vinifera]
           gi|296081891|emb|CBI20896.3| unnamed protein product
           [Vitis vinifera]
          Length = 420

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 44/94 (46%), Positives = 49/94 (52%), Gaps = 16/94 (17%)
 Frame = -1

Query: 236 MVLVGRVLSMTSRGLR-------------FLTTSTCSNPLFLKLLQGSTSNIKPTLDCEA 96
           M  V RVLS+  RGLR             F      SNPL +KLLQ S S IK  LD E 
Sbjct: 1   MGFVLRVLSVAKRGLRPRLVLIPCRSQRLFCDKPLVSNPLLIKLLQESISRIKTVLDSED 60

Query: 95  E---NQDSLIWEPLLTSLKSSSPQKAQLVLEWKL 3
                     W+ LLT+LKSSSP KA LVLEW+L
Sbjct: 61  NFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRL 94


>ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
 Frame = -1

Query: 182 TTSTCSNPLFLKLLQGSTSNIKPTLDCEAE---NQDSLIWEPLLTSLKSSSPQKAQLVLE 12
           +T++ S+PL  KLLQ  TS I  TLD +         L W+PL+T+L+SSSP+KA LVLE
Sbjct: 37  STASSSDPLLSKLLQTPTSKIIITLDSDHSFNLKSSQLSWDPLITNLRSSSPEKAHLVLE 96

Query: 11  WKL 3
           W+L
Sbjct: 97  WRL 99


>emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
          Length = 1331

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 33/58 (56%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
 Frame = -1

Query: 167  SNPLFLKLLQGSTSNIKPTLDCEAE---NQDSLIWEPLLTSLKSSSPQKAQLVLEWKL 3
            SNPL +KLLQ S S IK  LD E           W+ LLT+LKSSSP KA LVLEW+L
Sbjct: 948  SNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRL 1005


>ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544396|gb|EEF45917.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 416

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/60 (51%), Positives = 40/60 (66%)
 Frame = -1

Query: 182 TTSTCSNPLFLKLLQGSTSNIKPTLDCEAENQDSLIWEPLLTSLKSSSPQKAQLVLEWKL 3
           T +  SNPL  KLLQ   S IK TLD +  N     ++ L+T+L SSSP+KA+LVLEW+L
Sbjct: 33  TITNSSNPLLSKLLQLPNSKIKSTLDSDL-NSSQFPFDALVTALASSSPEKARLVLEWRL 91