BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041085
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH68023.1| OSIGBa0136O08-OSIGBa0153H12.1 [Oryza sativa Indi...    59   3e-07
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa Japonica Group]         59   3e-07
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    57   1e-06
gb|AAK27805.1|AC022457_8 putative reverse transcriptase [Oryza s...    57   2e-06
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    56   3e-06

>emb|CAH68023.1| OSIGBa0136O08-OSIGBa0153H12.1 [Oryza sativa Indica Group]
          Length = 1171

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = -2

Query: 220  FIYPGAPIS*GKVKTVYFDKLVERVKQKLAGWKNKLTSQGGRLI*TRHVLQSMPINLMSS 41
            F Y G PI   K++   + ++VER ++KL+ WK KL S GGRL     VL S+P+ +MS 
Sbjct: 869  FRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSF 928

Query: 40   *VVPQSVLRRLE 5
              +P  VL++L+
Sbjct: 929  LAIPSGVLKKLD 940


>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa Japonica Group]
          Length = 1140

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = -2

Query: 220  FIYPGAPIS*GKVKTVYFDKLVERVKQKLAGWKNKLTSQGGRLI*TRHVLQSMPINLMSS 41
            F Y G PI   K++   + ++VER ++KL+ WK KL S GGRL     VL S+P+ +MS 
Sbjct: 980  FRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSF 1039

Query: 40   *VVPQSVLRRLE 5
              +P  VL++L+
Sbjct: 1040 LAIPSGVLKKLD 1051


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 45/67 (67%)
 Frame = -2

Query: 202 PIS*GKVKTVYFDKLVERVKQKLAGWKNKLTSQGGRLI*TRHVLQSMPINLMSS*VVPQS 23
           P+   ++    F +++ERV  +++GW+ K  S  GRL  T+ VL SMP++ MS+ ++PQS
Sbjct: 2   PVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQS 61

Query: 22  VLRRLEE 2
           +L RL++
Sbjct: 62  ILNRLDQ 68


>gb|AAK27805.1|AC022457_8 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 413

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 46/71 (64%)
 Frame = -2

Query: 214 YPGAPIS*GKVKTVYFDKLVERVKQKLAGWKNKLTSQGGRLI*TRHVLQSMPINLMSS*V 35
           Y G P++  +++ V+   L++R+K +LA WK KL S GGR      VL SMPI +M++  
Sbjct: 132 YLGMPLTVSRLRKVHLQYLIDRIKARLASWKKKLLSAGGRRELVLSVLSSMPIYVMTALK 191

Query: 34  VPQSVLRRLEE 2
           +P+ +++ +++
Sbjct: 192 IPKQIIQEIDK 202


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/73 (41%), Positives = 44/73 (60%)
 Frame = -2

Query: 220 FIYPGAPIS*GKVKTVYFDKLVERVKQKLAGWKNKLTSQGGRLI*TRHVLQSMPINLMSS 41
           F Y GAPI  GK K ++F  + ++VK KLA WK  L S  GR+   + V+QSM ++ MS 
Sbjct: 494 FTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSI 553

Query: 40  *VVPQSVLRRLEE 2
              P  +L+ +E+
Sbjct: 554 YSWPIKILKEMEK 566