BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041079
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
emb|CBI25851.3| unnamed protein product [Vitis vinifera]               87   1e-15
emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]    87   1e-15
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,...    81   1e-13
ref|XP_003604902.1| Pentatricopeptide repeat-containing protein ...    79   5e-13

>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
 Frame = +1

Query: 7   MSINSIYRHFPLNYRLXXXXXXXXXXXXXDETNYFKLLQTNYNLEKTLTKNRGKLNSSIV 186
           M+ +S+ R  P  Y +              E  Y  L +   N+EKTL   R KL+SS V
Sbjct: 1   MAFSSVSRLLP--YSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCV 58

Query: 187 EDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----IREVLEIYRK 354
            +VL +CS  +  LGLRFFIWAG+QS YRHS ++Y+KAC  F I +    I +V+E YR 
Sbjct: 59  NEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRV 118

Query: 355 E 357
           E
Sbjct: 119 E 119


>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
 Frame = +1

Query: 7   MSINSIYRHFPLNYRLXXXXXXXXXXXXXDETNYFKLLQTNYNLEKTLTKNRGKLNSSIV 186
           M+ +S+ R  P  Y +              E  Y  L +   N+EKTL   R KL+SS V
Sbjct: 7   MAFSSVSRLLP--YSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCV 64

Query: 187 EDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----IREVLEIYRK 354
            +VL +CS  +  LGLRFFIWAG+QS YRHS ++Y+KAC  F I +    I +V+E YR 
Sbjct: 65  NEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRV 124

Query: 355 E 357
           E
Sbjct: 125 E 125


>emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
          Length = 577

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
 Frame = +1

Query: 7   MSINSIYRHFPLNYRLXXXXXXXXXXXXXDETNYFKLLQTNYNLEKTLTKNRGKLNSSIV 186
           M+ +S+ R  P  Y +              E  Y  L +   N+EKTL   R KL+SS V
Sbjct: 1   MAFSSVSRLLP--YSIRHKNPNFSTALSPAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCV 58

Query: 187 EDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----IREVLEIYRK 354
            +VL +CS  +  LGLRFFIWAG+QS YRHS ++Y+KAC  F I +    I +V+E YR 
Sbjct: 59  NEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRV 118

Query: 355 E 357
           E
Sbjct: 119 E 119


>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
 Frame = +1

Query: 106 YFKLLQTNYNLEKTLTKNRGKLNSSIVEDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKF 285
           Y  L     N+EK+L   + KL++  V +VL KCS +   +GLRFF+WAG QS+YRHS F
Sbjct: 35  YTHLQNNPNNVEKSLNSIKPKLDTRCVTEVLHKCSLNNSQIGLRFFVWAGYQSNYRHSSF 94

Query: 286 IYNKACNFFEIER----IREVLEIYRKE 357
           +Y+KAC  F I++    + ++ E YR E
Sbjct: 95  LYSKACKLFNIKQNPQAVLDLFEFYRAE 122


>ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505957|gb|AES87099.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 449

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = +1

Query: 97  ETNYFKLLQTN-YNLEKTLTKNRGKLNSSIVEDVLRKCSSDKPILGLRFFIWAGLQSDYR 273
           +T Y  L +TN   +E  L+K + KL+S  V  VL KC   +  LG+RFFIWAG QS YR
Sbjct: 8   DTLYTHLNKTNGITIENALSKTKPKLDSQCVIQVLNKCFPKQSQLGVRFFIWAGFQSGYR 67

Query: 274 HSKFIYNKACNFFEIERIREVL 339
           HS ++Y K CN FEI++  E++
Sbjct: 68  HSGYMYRKVCNLFEIDKNPEII 89