BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041065
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    46   1e-09
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    52   4e-09
ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein A...    47   7e-09
ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [S...    41   1e-07
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    51   2e-07

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 46.2 bits (108), Expect(2) = 1e-09
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 202 LRRNSSPLISKEKACSPKEEGGLDIRIFKDINLSMLIKMSWSFLNDSND-WASYMNGKY 29
           + +    L+S  K C PK EGG+ +R  +D+N +++ K+ W  L D    WA  +  KY
Sbjct: 694 MEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY 752



 Score = 41.2 bits (95), Expect(2) = 1e-09
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = -3

Query: 335 GRIVLAKHVLNSIPVRNMAIYKWPTATIKECDRIIRNIIWIANPSKKK 192
           GRI L K VL+SIPV  M+    P +T+   DR  R  +W +   KKK
Sbjct: 651 GRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKK 698


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 51.6 bits (122), Expect(2) = 4e-09
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = -3

Query: 335 GRIVLAKHVLNSIPVRNMAIYKWPTATIKECDRIIRNIIWIANPSKKKFITL 180
           GRI L K V+ S+ V  M+IY WP   +KE ++ I+N IW  + +K+K +T+
Sbjct: 534 GRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTV 585



 Score = 33.9 bits (76), Expect(2) = 4e-09
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -1

Query: 178 ISKEKACSPKEEGGLDIRIFKDINLSMLIKMSWSFLNDSNDWASYMNGKYNNRI 17
           ++  K C+  EEGGL ++    +N +  +K+ W+ +     WA+ +   +  ++
Sbjct: 585 VAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIRNSWCGQV 638


>ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 549

 Score = 47.4 bits (111), Expect(2) = 7e-09
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 196 RNSSPLISKEKACSPKEEGGLDIRIFKDINLSMLIKMSWS-FLNDSNDWASYMNGKY 29
           +N  P I  EK C PKE+GGL ++     N S+L K  W  F N    WA  +  KY
Sbjct: 240 QNKIPWIKWEKVCLPKEQGGLGVKDIISFNTSLLGKWKWEMFQNQEETWARVLESKY 296



 Score = 37.4 bits (85), Expect(2) = 7e-09
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 341 FQGRIVLAKHVLNSIPVRNMAIYKWPTATIKECDRIIRNIIW 216
           F GR++L   VL SIP+  ++ ++ P   I +  R+ RN +W
Sbjct: 193 FGGRVILINSVLTSIPIYFLSFFRVPRQVISKITRLQRNFLW 234


>ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [Sorghum bicolor]
           gi|241946107|gb|EES19252.1| hypothetical protein
           SORBIDRAFT_09g007400 [Sorghum bicolor]
          Length = 835

 Score = 41.2 bits (95), Expect(2) = 1e-07
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 181 LISKEKACSPKEEGGLDIRIFKDINLSMLIKMSWSFLNDSNDWASYMNGKY 29
           LI   K C  K++GG+ I+  + +N+S+LIK  W   N+ + W   +  KY
Sbjct: 459 LIKWTKICRSKKKGGIGIKDIRKMNVSLLIKWWWKLDNEDDVWQKIIKHKY 509



 Score = 39.7 bits (91), Expect(2) = 1e-07
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 335 GRIVLAKHVLNSIPVRNMAIYKWPTATIKECDRIIRNIIWIANPSKKKF 189
           GR  L    LN+ P+ +M+IY  P + I   D+I RN  W    +K+K+
Sbjct: 409 GRSTLISSSLNNAPIYHMSIYLLPKSVIGRLDKIRRNFFWQGGSTKQKY 457


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 51.2 bits (121), Expect(2) = 2e-07
 Identities = 18/52 (34%), Positives = 35/52 (67%)
 Frame = -3

Query: 335 GRIVLAKHVLNSIPVRNMAIYKWPTATIKECDRIIRNIIWIANPSKKKFITL 180
           GR+ + K V+ S+   ++ +Y WPT+ +K+ ++ I+N IW  + SK+K +T+
Sbjct: 75  GRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTV 126



 Score = 28.9 bits (63), Expect(2) = 2e-07
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 178 ISKEKACSPKEEGGLDIRIFKDINLSMLIKMSWS 77
           ++ +K C P ++GGL IR    +N +  +K+ W+
Sbjct: 126 VAWKKLCRPFDQGGLRIRSLIQLNSASNLKLCWN 159