BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041062
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...    75   7e-12
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...    75   7e-12
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...    75   7e-12
emb|CBI37903.3| unnamed protein product [Vitis vinifera]               65   7e-09
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...    65   7e-09

>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/71 (52%), Positives = 49/71 (69%)
 Frame = -2

Query: 215 EAVNSLQLLITKGIRXXXXXXXXLIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 36
           +AV+ L+ L  +GIR        L+QQC +T SL+QGKW+H +L++TGFK      NTLL
Sbjct: 29  QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKR----PNTLL 84

Query: 35  SNHLIHMYLKC 3
           SNHLI MY+KC
Sbjct: 85  SNHLIGMYMKC 95


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/93 (44%), Positives = 52/93 (55%)
 Frame = -2

Query: 281 KTKSPTCXXXXXXXXXXXXXXKEAVNSLQLLITKGIRXXXXXXXXLIQQCANTNSLQQGK 102
           +TK   C               +A++SL LL   GIR        L+QQCANT SL+ GK
Sbjct: 11  RTKRVPCIVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGK 70

Query: 101 WVHLYLRLTGFKHSHPTTNTLLSNHLIHMYLKC 3
           WVHL+L++TG K      NT L+NHLI+MY KC
Sbjct: 71  WVHLHLKVTGLKR----PNTFLANHLINMYSKC 99


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/71 (52%), Positives = 49/71 (69%)
 Frame = -2

Query: 215 EAVNSLQLLITKGIRXXXXXXXXLIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 36
           +AV+ L+ L  +GIR        L+QQC +T SL+QGKW+H +L++TGFK      NTLL
Sbjct: 29  QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKR----PNTLL 84

Query: 35  SNHLIHMYLKC 3
           SNHLI MY+KC
Sbjct: 85  SNHLIGMYMKC 95


>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/71 (47%), Positives = 47/71 (66%)
 Frame = -2

Query: 215 EAVNSLQLLITKGIRXXXXXXXXLIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 36
           EAV+SL+ L  +G+R        L+Q CA++ +L++GK VHL+L+LTG K       T L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKR----PGTFL 97

Query: 35  SNHLIHMYLKC 3
           SNHLI+MY KC
Sbjct: 98  SNHLINMYAKC 108


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/71 (47%), Positives = 47/71 (66%)
 Frame = -2

Query: 215 EAVNSLQLLITKGIRXXXXXXXXLIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 36
           EAV+SL+ L  +G+R        L+Q CA++ +L++GK VHL+L+LTG K       T L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKR----PGTFL 97

Query: 35  SNHLIHMYLKC 3
           SNHLI+MY KC
Sbjct: 98  SNHLINMYAKC 108