BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041060
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
emb|CBI21441.3| unnamed protein product [Vitis vinifera]              121   5e-26
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...   108   5e-22
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
gb|EAY88820.1| hypothetical protein OsI_10293 [Oryza sativa Indi...    91   7e-17

>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/89 (61%), Positives = 71/89 (79%)
 Frame = -2

Query: 268 QIHAHVRRKDFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNG 89
           Q+HA++ +  F+S +PVWNALI+MYSK GC+  A S+F+NM  +D+VSWN+MIGG GM+G
Sbjct: 412 QVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHG 471

Query: 88  NGPAALQLLHEMYHSGIQPNSVTFTSALS 2
            G  ALQLL +M HS + PNSVTFTSALS
Sbjct: 472 LGQFALQLLRDMSHSDVCPNSVTFTSALS 500



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/88 (38%), Positives = 50/88 (56%)
 Frame = -2

Query: 268 QIHAHVRRKDFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNG 89
           Q+H  V        + V N+LI+MYSKSG V +   VF  M  +D++SWNSMI G   NG
Sbjct: 145 QVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNG 204

Query: 88  NGPAALQLLHEMYHSGIQPNSVTFTSAL 5
               +++LL  M   G +P+ VT+ + +
Sbjct: 205 FLEFSVELLASMRIRGFEPDMVTWNTVM 232


>emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/89 (61%), Positives = 71/89 (79%)
 Frame = -2

Query: 268 QIHAHVRRKDFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNG 89
           Q+HA++ +  F+S +PVWNALI+MYSK GC+  A S+F+NM  +D+VSWN+MIGG GM+G
Sbjct: 610 QVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHG 669

Query: 88  NGPAALQLLHEMYHSGIQPNSVTFTSALS 2
            G  ALQLL +M HS + PNSVTFTSALS
Sbjct: 670 LGQFALQLLRDMSHSDVCPNSVTFTSALS 698


>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score =  108 bits (270), Expect = 5e-22
 Identities = 54/89 (60%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
 Frame = -2

Query: 265 IHAHVRRK-DFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNG 89
           IHA+VR+    +S V VWNA+I+MY K GCV +A ++F +M  KD+VSWN+MIGG GM+G
Sbjct: 385 IHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHG 444

Query: 88  NGPAALQLLHEMYHSGIQPNSVTFTSALS 2
           +G AAL+LL EM  SGI PNS TFTS LS
Sbjct: 445 HGQAALKLLKEMILSGIFPNSTTFTSVLS 473



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/87 (39%), Positives = 49/87 (56%)
 Frame = -2

Query: 265 IHAHVRRKDFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGN 86
           IH  V      S + V N+LI+MY K G   +A  VF  M+ +D+ SWNSMI G   NG 
Sbjct: 118 IHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGL 177

Query: 85  GPAALQLLHEMYHSGIQPNSVTFTSAL 5
              A++LL+ M   G +P+ VT+ + +
Sbjct: 178 ADLAVELLNCMRLDGFEPDVVTWNTLM 204


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  102 bits (253), Expect = 4e-20
 Identities = 48/89 (53%), Positives = 68/89 (76%)
 Frame = -2

Query: 268 QIHAHVRRKDFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNG 89
           +IHA+VR+ +F+  +PV+NALI+MYS  GC+  A SVF+ M  +D+VSWN++IGG G +G
Sbjct: 393 EIHAYVRKCNFSGVIPVYNALIHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHG 452

Query: 88  NGPAALQLLHEMYHSGIQPNSVTFTSALS 2
            G  AL+LL EM  SG++P+ VTF+ ALS
Sbjct: 453 LGQTALELLQEMSGSGVRPDLVTFSCALS 481


>gb|EAY88820.1| hypothetical protein OsI_10293 [Oryza sativa Indica Group]
          Length = 671

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
 Frame = -2

Query: 268 QIHAHVRRK--DFNSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGM 95
           Q+H H+ R   D  S   +WNAL+NMYS+ GCV+ A  VF  ++ KD+VSWN MIG    
Sbjct: 246 QVHGHMVRNHGDSGSNAILWNALMNMYSRVGCVDNAEHVFFEIERKDVVSWNVMIGAFAK 305

Query: 94  NGNGPAALQLLHEMYHSGIQPNSVTFTSAL 5
           NG+G  AL+L+  M   G+QP+SVTFT+ L
Sbjct: 306 NGHGERALELVDAMLRCGMQPDSVTFTTLL 335