BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040996
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533688.1| PREDICTED: pentatricopeptide repeat-containi...   128   4e-29
ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|2...   130   9e-29
ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containi...   128   4e-28
emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]   127   7e-28
ref|XP_002531188.1| pentatricopeptide repeat-containing protein,...   127   9e-28

>ref|XP_003533688.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like, partial [Glycine max]
          Length = 541

 Score =  128 bits (321), Expect(2) = 4e-29
 Identities = 61/106 (57%), Positives = 79/106 (74%)
 Frame = -2

Query: 320 VEGCSAAGRIEESLRYCEEMVNVGFSPSCFAFNEMVRKLCDISDVQKANAMLTVMLEKGF 141
           V GC+AA   E+ + + EEMV VGF P+C  FN++V +LC+   V+KAN MLTV+LEKGF
Sbjct: 380 VVGCAAAEDSEQCVSFFEEMVRVGFVPACMVFNKVVERLCEKGKVEKANGMLTVLLEKGF 439

Query: 140 LPNEATYAYLMDGYGKEGEVQEVLKLYYEMEYRKHSLGFMAYTSII 3
           LPN+ TYA+LM GY ++ EVQEVLKLYYEMEYR  S G   + +I+
Sbjct: 440 LPNDVTYAHLMQGYARKEEVQEVLKLYYEMEYRCVSPGLSVFGTIV 485



 Score = 25.0 bits (53), Expect(2) = 4e-29
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 379 LMQEMRSAGSKPYDETYNALLRG 311
           L++EM+  G +PY ET+  ++ G
Sbjct: 360 LLREMQGKGLRPYGETFEHIVVG 382


>ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|222848159|gb|EEE85706.1|
           predicted protein [Populus trichocarpa]
          Length = 556

 Score =  130 bits (328), Expect = 9e-29
 Identities = 61/106 (57%), Positives = 81/106 (76%)
 Frame = -2

Query: 320 VEGCSAAGRIEESLRYCEEMVNVGFSPSCFAFNEMVRKLCDISDVQKANAMLTVMLEKGF 141
           +EGC+ AGR+EE+L YC++M+ +G  PS  AFNEMV KLC I DV +AN MLT +L++GF
Sbjct: 380 LEGCAKAGRVEETLSYCKKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGF 439

Query: 140 LPNEATYAYLMDGYGKEGEVQEVLKLYYEMEYRKHSLGFMAYTSII 3
           L +E TY+ L+ GY K  ++QE+LKLYYEMEYR  S G M +TS+I
Sbjct: 440 LADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSPGLMGFTSLI 485


>ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Vitis vinifera]
          Length = 547

 Score =  128 bits (322), Expect = 4e-28
 Identities = 60/106 (56%), Positives = 80/106 (75%)
 Frame = -2

Query: 320 VEGCSAAGRIEESLRYCEEMVNVGFSPSCFAFNEMVRKLCDISDVQKANAMLTVMLEKGF 141
           + GCS AGR+EE LR CE M+  G  PSC+AFN M  KLC+   V++A+ MLT++L+KGF
Sbjct: 373 IAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKGF 432

Query: 140 LPNEATYAYLMDGYGKEGEVQEVLKLYYEMEYRKHSLGFMAYTSII 3
           +P+E TY+ L+  YGK GE+Q+VLKLYYEMEYR  S G +A+ S+I
Sbjct: 433 VPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLSPGLLAFESLI 478


>emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]
          Length = 642

 Score =  127 bits (320), Expect = 7e-28
 Identities = 60/106 (56%), Positives = 79/106 (74%)
 Frame = -2

Query: 320 VEGCSAAGRIEESLRYCEEMVNVGFSPSCFAFNEMVRKLCDISDVQKANAMLTVMLEKGF 141
           + GCS AGR+EE LR CE M+  G  PSC+AFN M  KLC+   V++A+ MLT++L+KGF
Sbjct: 373 IAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKGF 432

Query: 140 LPNEATYAYLMDGYGKEGEVQEVLKLYYEMEYRKHSLGFMAYTSII 3
           +P+E TY+ L+  YGK GE+Q+VLKLYYEMEYR  S G + + SII
Sbjct: 433 VPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLSPGLLVFESII 478


>ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529229|gb|EEF31203.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  127 bits (319), Expect = 9e-28
 Identities = 57/106 (53%), Positives = 78/106 (73%)
 Frame = -2

Query: 320 VEGCSAAGRIEESLRYCEEMVNVGFSPSCFAFNEMVRKLCDISDVQKANAMLTVMLEKGF 141
           +EGC+ AGR+EE L Y E+M+  G  PS  AFN+M+ KLC+  +V +AN  LT +L+KGF
Sbjct: 381 IEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKGF 440

Query: 140 LPNEATYAYLMDGYGKEGEVQEVLKLYYEMEYRKHSLGFMAYTSII 3
            P+E TY+YLM GY ++ ++QEVLKLYYEMEYR  S G + +T +I
Sbjct: 441 SPDETTYSYLMTGYERDNQIQEVLKLYYEMEYRPLSPGLLVFTPLI 486