BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040994
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    55   8e-06

>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
 Frame = -2

Query: 365  LYQELQAIAEGLEQAIGIWITNLEVNSDSLGAINILNGLERCPWYCSNLVALIVTLKSSL 186
            L  EL AI +G+  AI + IT++ V SDSL +IN++              ALI  ++  L
Sbjct: 755  LLAELTAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSS---KFHIHAALIQDIRDKL 811

Query: 185  VICNF--KHIFREGNKVVDYLSKLYRSPGDHFLSFLPPLDLKLNSIVEEDKSGTMYFR 18
             + NF   H  REGN+  DYL+KL      + L    P D +L  +++ D +GT++ R
Sbjct: 812  SLRNFSLNHTLREGNQSADYLAKLGAMSDVNVLIHQSPPD-ELCPLLKNDAAGTLFLR 868