BLASTX nr result
ID: Coptis23_contig00040946
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00040946
(306 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi... 153 1e-35
emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera] 153 1e-35
ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|2... 145 3e-33
ref|XP_002513372.1| pentatricopeptide repeat-containing protein,... 131 5e-29
ref|XP_002883266.1| pentatricopeptide repeat-containing protein ... 116 2e-24
>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 153 bits (387), Expect = 1e-35
Identities = 73/101 (72%), Positives = 87/101 (86%)
Frame = +1
Query: 4 EGNYCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVA 183
EG Y DAL++F E+ Q N+ +D ++LCSMLNICAN+AS +LGTQIHA AL Q +YDVA
Sbjct: 311 EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA 370
Query: 184 MGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
MGNALIDMYAKSG+IEDA RAFDEM+EKNV+SWTSLI+GYA
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYA 411
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +1
Query: 22 DALEIFSELYQKNVHVDAIVLCSMLNICANVASLS-LGTQIHALALTSQTNYDVAMGNAL 198
+A+ +F +++ V + ++ S++ C+ ++ G Q+H + + DV +G AL
Sbjct: 828 EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTAL 887
Query: 199 IDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
+ Y G + +A + F+EM + NVVSWTSL+ GY+
Sbjct: 888 VHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/96 (29%), Positives = 55/96 (57%)
Frame = +1
Query: 16 CTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNA 195
C ++L F + + ++ L S+L++C++V +L G IH L + + +V + N
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNT 1088
Query: 196 LIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGY 303
L+ +Y+++G EDA F M E++++SW S++ Y
Sbjct: 1089 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACY 1124
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Frame = +1
Query: 16 CTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNA 195
C D L+I +EL Q ++ + S L C+N L +HAL + + + + +GNA
Sbjct: 1130 CLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNA 1189
Query: 196 LIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
L+ MY K G + +A + M + + V+W +LI G+A
Sbjct: 1190 LVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHA 1226
Score = 57.8 bits (138), Expect = 9e-07
Identities = 29/94 (30%), Positives = 50/94 (53%)
Frame = +1
Query: 25 ALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNALID 204
A +FS++ V + S L C ++ L +G Q+ + ++ + +AL+D
Sbjct: 115 AFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVD 174
Query: 205 MYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
++K G +EDA F M E++VVSW ++I GYA
Sbjct: 175 FHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA 208
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/95 (31%), Positives = 50/95 (52%)
Frame = +1
Query: 22 DALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNALI 201
+AL+IF E+ V++D L AN+A L G Q+H L + D+ + NA +
Sbjct: 1335 EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAM 1394
Query: 202 DMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
DMY K G++ D + + ++ +SW LI+ +A
Sbjct: 1395 DMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFA 1429
Score = 57.0 bits (136), Expect = 2e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +1
Query: 106 ANVASLSLGTQIHALALTSQTNYDVAMGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWT 285
+ + S G +HA + N + N LI+MY+K G+IE A FDEM+ +N SW+
Sbjct: 755 SEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWS 814
Query: 286 SLITGY 303
++++GY
Sbjct: 815 TMLSGY 820
>emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 153 bits (387), Expect = 1e-35
Identities = 73/101 (72%), Positives = 87/101 (86%)
Frame = +1
Query: 4 EGNYCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVA 183
EG Y DAL++F E+ Q N+ +D ++LCSMLNICAN+AS +LGTQIHA AL Q +YDVA
Sbjct: 432 EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA 491
Query: 184 MGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
MGNALIDMYAKSG+IEDA RAFDEM+EKNV+SWTSLI+GYA
Sbjct: 492 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYA 532
Score = 57.8 bits (138), Expect = 9e-07
Identities = 29/94 (30%), Positives = 50/94 (53%)
Frame = +1
Query: 25 ALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNALID 204
A +FS++ V + S L C ++ L +G Q+ + ++ + +AL+D
Sbjct: 236 AFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVD 295
Query: 205 MYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
++K G +EDA F M E++VVSW ++I GYA
Sbjct: 296 FHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA 329
>ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|222853575|gb|EEE91122.1|
predicted protein [Populus trichocarpa]
Length = 551
Score = 145 bits (367), Expect = 3e-33
Identities = 67/101 (66%), Positives = 86/101 (85%)
Frame = +1
Query: 1 REGNYCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDV 180
R+ NY + AL++F E+ Q ++ +D ++LCSM NICAN++SLS+G QIHALAL + YDV
Sbjct: 277 RDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDV 336
Query: 181 AMGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGY 303
AMGNALIDMYAKSG+I+DA RAF+EM+EKNV+SWTSLITGY
Sbjct: 337 AMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGY 377
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +1
Query: 22 DALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNALI 201
DAL +F ++ + + S+L C + L G QI S+ ++ + +AL+
Sbjct: 81 DALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALL 140
Query: 202 DMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
D+++K G +EDA F M+E++VVSW ++I YA
Sbjct: 141 DLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYA 175
>ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547280|gb|EEF48775.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 597
Score = 131 bits (330), Expect = 5e-29
Identities = 60/101 (59%), Positives = 82/101 (81%)
Frame = +1
Query: 1 REGNYCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDV 180
R+ +Y +AL++F ++ + +D + C+MLN+CA++ASLS+G QIHALA+ + +YDV
Sbjct: 317 RKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDV 376
Query: 181 AMGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGY 303
A GNAL+DMYAKSG+IEDA RAF EM+EKNV+SWTSLITGY
Sbjct: 377 ATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGY 417
Score = 67.8 bits (164), Expect = 9e-10
Identities = 35/102 (34%), Positives = 61/102 (59%)
Frame = +1
Query: 1 REGNYCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDV 180
+ G+Y DAL +FS++ + V + S+L C + L G QIH ++ ++
Sbjct: 115 KNGHY-QDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNL 173
Query: 181 AMGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGYA 306
+ +AL+D+++K G++EDA F+ M E++VVSW ++I GYA
Sbjct: 174 FVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYA 215
Score = 56.2 bits (134), Expect = 3e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +1
Query: 64 HVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGNALIDMYAKSGDIEDACR 243
H+ + + +L +C L G IH+ + + + ++ + LI Y K G+ +A +
Sbjct: 34 HLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARK 93
Query: 244 AFDEMQEKNVVSWTSLITGYA 306
FD M E+NVVSWT+ I+GYA
Sbjct: 94 VFDRMPERNVVSWTAQISGYA 114
>ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297329106|gb|EFH59525.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 564
Score = 116 bits (290), Expect = 2e-24
Identities = 58/100 (58%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = +1
Query: 10 NYCT-DALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALAL-TSQTNYDVA 183
N CT DA +IF+E+ +D +V+ SML IC +AS+++G QIH AL +SQ +D+A
Sbjct: 294 NICTSDAFDIFNEMILMKTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIA 353
Query: 184 MGNALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGY 303
+GN+LIDMYAKSGDIEDA AF+EM+EK+V SWTSLI GY
Sbjct: 354 LGNSLIDMYAKSGDIEDAVLAFEEMKEKDVRSWTSLIAGY 393
Score = 65.9 bits (159), Expect = 3e-09
Identities = 32/97 (32%), Positives = 57/97 (58%)
Frame = +1
Query: 13 YCTDALEIFSELYQKNVHVDAIVLCSMLNICANVASLSLGTQIHALALTSQTNYDVAMGN 192
Y DAL +F ++++++V + S+L C ++ L G QI + ++ + +
Sbjct: 93 YHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRS 152
Query: 193 ALIDMYAKSGDIEDACRAFDEMQEKNVVSWTSLITGY 303
AL+ +YA+ G +EDA FD M+E+++VSW S+I GY
Sbjct: 153 ALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGY 189