BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040905
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21038.3| unnamed protein product [Vitis vinifera]               85   5e-15
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...    85   5e-15
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    81   1e-13
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...    81   1e-13
ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    81   1e-13

>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = -3

Query: 294 DDDVYEPSCPFVLLDDDDPWIQTTDFTLGGVIGRCNSYRICMSPRFGVILEKALNYLK 121
           DDD+ E + PF LLDDDDPWI+TTDFT+ G IGRCNSYRI + PR+G  L+KA++YL+
Sbjct: 72  DDDI-EETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLR 128


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = -3

Query: 294 DDDVYEPSCPFVLLDDDDPWIQTTDFTLGGVIGRCNSYRICMSPRFGVILEKALNYLK 121
           DDD+ E + PF LLDDDDPWI+TTDFT+ G IGRCNSYRI + PR+G  L+KA++YL+
Sbjct: 234 DDDI-EETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLR 290


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 34/59 (57%), Positives = 47/59 (79%)
 Frame = -3

Query: 294 DDDVYEPSCPFVLLDDDDPWIQTTDFTLGGVIGRCNSYRICMSPRFGVILEKALNYLKQ 118
           DDD+ +   P+ LLDDDDPWI+TTDFT+ G IGRCN++R+ + PR+G+ L  A+NYLK+
Sbjct: 233 DDDIAK-LVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKE 290


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 36/62 (58%), Positives = 49/62 (79%)
 Frame = -3

Query: 303 TAEDDDVYEPSCPFVLLDDDDPWIQTTDFTLGGVIGRCNSYRICMSPRFGVILEKALNYL 124
           TA+DD  +E + PF LLDDDD WI+TTDFT  G IGRCN+YR+ + PR G+ L+KA++YL
Sbjct: 232 TADDD--FEKTVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYL 289

Query: 123 KQ 118
           ++
Sbjct: 290 RE 291


>ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
           6 [Cucumis sativus]
          Length = 1197

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 34/59 (57%), Positives = 47/59 (79%)
 Frame = -3

Query: 294 DDDVYEPSCPFVLLDDDDPWIQTTDFTLGGVIGRCNSYRICMSPRFGVILEKALNYLKQ 118
           DDD+ +   P+ LLDDDDPWI+TTDFT+ G IGRCN++R+ + PR+G+ L  A+NYLK+
Sbjct: 233 DDDIAK-LVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKE 290